Package: CLL

Version: 1.2.8

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch CLL_1.2.8.tar.gz

StartedAt: 2011-02-27 14:31:59 -0800 (Sun, 27 Feb 2011)

EndedAt: 2011-02-27 14:33:26 -0800 (Sun, 27 Feb 2011)

EllapsedTime: 86.1 seconds

RetCode: 0

Status:  OK

CheckDir: CLL.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-data-experiment/meat/CLL.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CLL/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CLL’ version ‘1.2.8’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘CLL’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* installing *source* package ‘CLL’ ...
** R
** data
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CLL)

name	user	system	elapsed
CLL-package	0.202	0.013	0.218
CLLbatch	7.204	0.375	7.757
disease	0.002	0.001	0.003
nsFilter	0.415	0.031	0.449
sCLLex	0.176	0.009	0.186
sFiltert	0.216	0.010	0.227
sFiltertBH	0.213	0.010	0.282