Package: CLL

Version: 1.2.8

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings CLL_1.2.8.tar.gz

StartedAt: 2011-04-06 14:11:53 -0700 (Wed, 06 Apr 2011)

EndedAt: 2011-04-06 14:12:42 -0700 (Wed, 06 Apr 2011)

EllapsedTime: 48.6 seconds

RetCode: 0

Status:  OK

CheckDir: CLL.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/CLL.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CLL/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CLL’ version ‘1.2.8’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘CLL’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* installing *source* package ‘CLL’ ...
** R
** data
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CLL)

name	user	system	elapsed
CLL-package	0.132	0.000	0.132
CLLbatch	3.688	0.120	3.808
disease	0.000	0.000	0.001
nsFilter	0.300	0.012	0.313
sCLLex	0.068	0.000	0.066
sFiltert	0.084	0.004	0.090
sFiltertBH	0.088	0.004	0.089