bgx 1.6.0
Ernest Turro
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/bgx | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/bgx.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'bgx/DESCRIPTION' ... OK
* this is package 'bgx' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'bgx' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating bgx-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating bgx-manual.tex ... OK
* checking bgx-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/bgx.Rcheck
---------- Making package bgx ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making qnorm.d from qnorm.c
making bgx.d from bgx.cc
making bgx_frontend.d from bgx_frontend.cc
making rundir.d from rundir.cc
making sokal.d from sokal.cc
gcc -std=gnu99 -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -std=c99 -O3 -Wall -c qnorm.c -o qnorm.o
g++ -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c bgx.cc -o bgx.o
g++ -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c bgx_frontend.cc -o bgx_frontend.o
g++ -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c rundir.cc -o rundir.o
g++ -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c sokal.cc -o sokal.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i bgx_res.rc -o bgx_res.o
g++ -shared -s -o bgx.dll bgx.def qnorm.o bgx.o bgx_frontend.o rundir.o sokal.o bgx_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package bgx for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: splines
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'bgx'
Formats: text html latex example chm
Note: removing empty section \examples in file 'analysis.bgx.Rd'
Note: removing empty section \examples in file 'analysis.bgx.Rd'
analysis.bgx text html latex chm
bgx text html latex example chm
Note: removing empty section \examples in file 'mcmc.bgx.Rd'
Note: removing empty section \examples in file 'mcmc.bgx.Rd'
mcmc.bgx text html latex chm
Note: removing empty section \examples in file 'readOutput.bgx.Rd'
Note: removing empty section \examples in file 'readOutput.bgx.Rd'
readOutput.bgx text html latex chm
Note: removing empty section \value in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \details in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \examples in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \value in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \details in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \examples in file 'saveAffinityPlot.bgx.Rd'
saveAffinityPlot.bgx text html latex chm
Note: removing empty section \details in file 'setupVars.bgx.Rd'
Note: removing empty section \examples in file 'setupVars.bgx.Rd'
Note: removing empty section \details in file 'setupVars.bgx.Rd'
Note: removing empty section \examples in file 'setupVars.bgx.Rd'
setupVars.bgx text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\bgx.Rcheck\00_pkg_src\bgx\chm\bgx.chm
Compile time: 0 minutes, 0 seconds
7 Topics
35 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\bgx.Rcheck\00_pkg_src\bgx\chm\bgx.chm, 27,356 bytes
Compression decreased file by 4,950 bytes.
adding MD5 sums
* DONE (bgx)