ppiStats 1.8.0
Tony Chiang
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ppiStats | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/ppiStats.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
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* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ppiStats-manual.tex ... OK
* checking ppiStats-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/ppiStats.Rcheck
---------- Making package ppiStats ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package ppiStats for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: GOstats
Loading required package: graph
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Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: org.Sc.sgd.db
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: ScISI
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Loading required package: RpsiXML
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Attaching package: 'XML'
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Attaching package: 'hypergraph'
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Loading required package: lattice
Loading required package: RColorBrewer
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'ppiStats'
Formats: text html latex example chm
assessSymmetry text html latex example chm
bpMatrix text html latex example chm
calcInOutDegStats text html latex example chm
createSummaryTables text html latex example chm
degreeEstimates text html latex example chm
estErrProbMethodOfMoments text html latex example chm
estimateCCMErrorRates text html latex example chm
estimatePPIErrorRates text html latex example chm
Note: removing empty section \examples in file 'findAdjacent.Rd'
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findAdjacent text html latex chm
genBPGraph text html latex example chm
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hgTests text html latex chm
idProteinErrorType text html latex example chm
idProteinType text html latex example chm
inOutScatterCharts text html latex example chm
nullDistDoublyTestedEdges text html latex example chm
separateExptBySize text html latex chm
twPERM text html latex example chm
viabilityCharts text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm
Compile time: 0 minutes, 0 seconds
20 Topics
46 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm, 43,459 bytes
Compression decreased file by 29,251 bytes.
adding MD5 sums
* DONE (ppiStats)