GGdata 0.99.2
VJ Carey
| Snapshot Date: 2008-10-16 12:02:11 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/GGdata | | Last Changed Rev: 711 / Revision: 729 | | Last Changed Date: 2008-09-13 11:47:15 -0700 (Sat, 13 Sep 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ ERROR ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | ERROR | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-data-experiment/meat/GGdata.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'GGdata/DESCRIPTION' ... OK
* this is package 'GGdata' version '0.99.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGdata' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GGdata-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'GGdata-Ex.R' failed.
The error most likely occurred in:
> ### * hmceuB36
>
> flush(stderr()); flush(stdout())
>
> ### Name: hmceuB36
> ### Title: representations of HapMap snp data + expression data
> ### Aliases: hmceuB36
> ### Keywords: models
>
> ### ** Examples
>
> data(hmceuB36)
> # be patient
> exprs(hmceuB36)[1:4,1:4]
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "exprs", for signature "smlSet"
Calls: exprs -> <Anonymous>
Execution halted
installing R.css in E:/biocbld/bbs-2.2-data-experiment/meat/GGdata.Rcheck
---------- Making package GGdata ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
preparing package GGdata for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GGBase
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: illuminaHumanv1.db
installing man source files
installing indices
Loading required package: methods
not zipping data
installing help
>>> Building/Updating help pages for package 'GGdata'
Formats: text html latex example chm
hmceuB36 text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-data-experiment\meat\GGdata.Rcheck\00_pkg_src\GGdata\chm\GGdata.chm
Compile time: 0 minutes, 0 seconds
2 Topics
2 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-data-experiment\meat\GGdata.Rcheck\00_pkg_src\GGdata\chm\GGdata.chm, 16,935 bytes
Compression increased file by 9,173 bytes.
adding MD5 sums
* DONE (GGdata)