biocViews 1.8.0
Biocore Team c/o BioC user list
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/biocViews | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | [ ERROR ] | skipped | skipped |
* checking for file 'biocViews/DESCRIPTION' ... OK
* preparing 'biocViews':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'biocViews' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
** help
>>> Building/Updating help pages for package 'biocViews'
Formats: text html latex example
BiocView-class text html latex
Htmlized-class text html latex
PackageDetail-class text html latex example
RepositoryDetail-class text html latex
biocViews-package text html latex example
biocViewsVocab text html latex example
extractVignettes text html latex
genReposControlFiles text html latex
getBiocSubViews text html latex example
getBiocViews text html latex example
getPacksAndViews text html latex
getSubTerms text html latex example
htmlDoc text html latex
htmlFilename text html latex
htmlValue text html latex
writeBiocViews text html latex
writeHtmlDoc text html latex
writePackageDetailHtml text html latex
writeRepositoryHtml text html latex
writeTopLevelView text html latex
write_REPOSITORY text html latex
write_SYMBOLS text html latex
write_VIEWS text html latex
** building package indices ...
* DONE (biocViews)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Error: processing vignette 'HOWTO-BCV.Rnw' failed with diagnostics:
chunk 5 (label=htmlViewsGen)
Error in UseMethod("xmlName", node) : no applicable method for "xmlName"
Execution halted