biocViews 1.8.0
Biocore Team c/o BioC user list
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/biocViews | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
* checking for file 'biocViews/DESCRIPTION' ... OK
* preparing 'biocViews':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst179681320
---------- Making package biocViews ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package biocViews for lazy loading
Loading required package: tools
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'biocViews'
Formats: text html latex example chm
BiocView-class text html latex chm
Htmlized-class text html latex chm
PackageDetail-class text html latex example chm
RepositoryDetail-class text html latex chm
biocViews-package text html latex example chm
biocViewsVocab text html latex example chm
extractVignettes text html latex chm
genReposControlFiles text html latex chm
getBiocSubViews text html latex example chm
getBiocViews text html latex example chm
getPacksAndViews text html latex chm
getSubTerms text html latex example chm
htmlDoc text html latex chm
htmlFilename text html latex chm
htmlValue text html latex chm
writeBiocViews text html latex chm
writeHtmlDoc text html latex chm
writePackageDetailHtml text html latex chm
writeRepositoryHtml text html latex chm
writeTopLevelView text html latex chm
write_REPOSITORY text html latex chm
write_SYMBOLS text html latex chm
write_VIEWS text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\biocViews\chm\biocViews.chm
Compile time: 0 minutes, 1 second
24 Topics
115 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\biocViews\chm\biocViews.chm, 37,634 bytes
Compression decreased file by 45,211 bytes.
adding MD5 sums
* DONE (biocViews)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Error: processing vignette 'HOWTO-BCV.Rnw' failed with diagnostics:
chunk 5 (label=htmlViewsGen)
Error in UseMethod("xmlName", node) : no applicable method for "xmlName"
Execution halted