GlobalAncova 3.6.0
R. Meister
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GlobalAncova | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GlobalAncova.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'GlobalAncova/DESCRIPTION' ... OK
* this is package 'GlobalAncova' version '3.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GlobalAncova' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GlobalAncova-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GlobalAncova-manual.tex ... OK
* checking GlobalAncova-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GlobalAncova.Rcheck
---------- Making package GlobalAncova ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making GlobalAncova.d from GlobalAncova.c
making ludcmp.d from ludcmp.c
making matrix.d from matrix.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268: warning: 'ord_perm' may be used uninitialized in this function
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166: warning: 'ord_perm' may be used uninitialized in this function
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ludcmp.c -o ludcmp.o
ludcmp.c:232:24: warning: no newline at end of file
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c matrix.c -o matrix.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i GlobalAncova_res.rc -o GlobalAncova_res.o
gcc -std=gnu99 -shared -s -o GlobalAncova.dll GlobalAncova.def GlobalAncova.o ludcmp.o matrix.o GlobalAncova_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package GlobalAncova for lazy loading
Loading required package: corpcor
Loading required package: globaltest
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "pGAapprox": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "GlobalAncova.closed": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "Plot.genes": formal arguments in method and function do not appear in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "Plot.subjects": formal arguments in method and function do not appear in the same order
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'GlobalAncova'
Formats: text html latex example chm
GAGO text html latex example chm
GlobalAncova-methods text html latex chm
GlobalAncova text html latex example chm
GlobalAncova.closed-methods text html latex chm
GlobalAncova.closed text html latex chm
GlobalAncova.decomp text html latex example chm
Plot.all text html latex example chm
Plot.genes-methods text html latex chm
Plot.genes text html latex example chm
Plot.sequential text html latex example chm
Plot.subjects-methods text html latex chm
Plot.subjects text html latex example chm
colon.normal text html latex example chm
colon.pheno text html latex example chm
colon.tumour text html latex example chm
pair.compare text html latex example chm
pathways text html latex example chm
phenodata text html latex example chm
vantVeer text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\GlobalAncova.Rcheck\00_pkg_src\GlobalAncova\chm\GlobalAncova.chm
Compile time: 0 minutes, 0 seconds
20 Topics
87 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\GlobalAncova.Rcheck\00_pkg_src\GlobalAncova\chm\GlobalAncova.chm, 45,679 bytes
Compression decreased file by 51,068 bytes.
adding MD5 sums
* DONE (GlobalAncova)