Category 2.6.0
Robert Gentleman
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/Category | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/Category.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'Category/DESCRIPTION' ... OK
* this is package 'Category' version '2.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Category' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic 'summary' and siglist 'DBIObject'
generic 'summary' and siglist 'Bimap'
generic 'summary' and siglist 'AnnDbBimap'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Category-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Category-manual.tex ... OK
* checking Category-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.2-bioc/meat/Category.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/Category.Rcheck
---------- Making package Category ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package Category for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: graph
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
installing help
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Note: removing empty section \examples
Note: removing empty section \examples
>>> Building/Updating help pages for package 'Category'
Formats: text html latex example chm
ChrBandTree-class text html latex example chm
ChrMapHyperGParams-class text html latex example chm
ChrMapHyperGResult-class text html latex example chm
ChrMapLinearMParams-class text html latex example chm
ChrMapLinearMResult-class text html latex example chm
DatPkg-class text html latex example chm
GOHyperGParams-class text html latex chm
HyperGParams-class text html latex chm
HyperGResult-accessors text html latex example chm
HyperGResult-class text html latex chm
HyperGResultBase-class text html latex chm
KEGGHyperGParams-class text html latex chm
LinearMParams-class text html latex example chm
LinearMResult-class text html latex example chm
LinearMResultBase-class text html latex example chm
MAPAmat text html latex example chm
NewChrBandTree text html latex chm
applyByCategory text html latex example chm
cateGOryMatrix text html latex example chm
categoryToEntrezBuilder text html latex chm
cb_contingency text html latex chm
cb_parse_band_Hs text html latex example chm
cb_parse_band_Mm text html latex example chm
cb_test text html latex chm
effectSize text html latex chm
exampleLevels text html latex chm
findAMstats text html latex example chm
geneGoHyperGeoTest text html latex chm
geneKeggHyperGeoTest text html latex chm
getPathNames text html latex example chm
gseattperm text html latex example chm
hyperGTest text html latex chm
linearMTest text html latex chm
local_test_factory text html latex chm
makeChrBandGraph text html latex example chm
makeEBcontr text html latex example chm
makeValidParams text html latex chm
probes2MAP text html latex example chm
probes2Path text html latex example chm
tree_visitor text html latex chm
ttperm text html latex example chm
universeBuilder text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\Category.Rcheck\00_pkg_src\Category\chm\Category.chm
Compile time: 0 minutes, 0 seconds
43 Topics
335 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\Category.Rcheck\00_pkg_src\Category\chm\Category.chm, 75,147 bytes
Compression decreased file by 143,953 bytes.
adding MD5 sums
* DONE (Category)