altcdfenvs 2.0.1
Laurent Gautier
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/altcdfenvs | | Last Changed Rev: 30871 / Revision: 30951 | | Last Changed Date: 2008-04-06 06:27:13 -0700 (Sun, 06 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | ERROR | skipped | skipped |
* checking for file 'altcdfenvs/DESCRIPTION' ... OK
* preparing 'altcdfenvs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst572401596
---------- Making package altcdfenvs ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
preparing package altcdfenvs for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: makecdfenv
Loading required package: Biostrings
Loading required package: hypergraph
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from package:Biostrings :
complement
Attaching package: 'hypergraph'
The following object(s) are masked from package:Biostrings :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
c("arguments in definition for validity method for class AffyProbesMatch", "changed from (obj) to (object)")
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "toHypergraph" no definition for class: "CdfEnvAffy"
Creating a new generic function for "plot" in "altcdfenvs"
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \description
Note: removing empty section \description
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \section{Warning}
Note: removing empty section \details
Note: removing empty section \section{Warning}
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \value
Note: removing empty section \value
>>> Building/Updating help pages for package 'altcdfenvs'
Formats: text html latex example chm
AffyProbesMatch-class text html latex example chm
CdfEnvAffy-class text html latex example chm
appendCdfEnvAffy text html latex example chm
cdfenv text html latex example chm
cdfenvEx text html latex example chm
copyCdfEnvAffy text html latex chm
countduplicated text html latex chm
geneNames text html latex chm
getxy.probeseq text html latex example chm
index2xy text html latex example chm
indexProbes.CdfEnvAffy text html latex chm
matchAffyProbes text html latex example chm
missing link(s): buildCdfEnv.biostrings
plot.CdfEnvAffy text html latex example chm
removeIndex text html latex example chm
unique.CdfEnvAffy text html latex example chm
utils.FASTA text html latex example chm
validAffyBatch text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\altcdfenvs\chm\altcdfenvs.chm
Compile time: 0 minutes, 4 seconds
18 Topics
72 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\altcdfenvs\chm\altcdfenvs.chm, 33,771 bytes
Compression decreased file by 30,107 bytes.
adding MD5 sums
* DONE (altcdfenvs)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: makecdfenv
Loading required package: Biostrings
Loading required package: hypergraph
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from package:Biostrings :
complement
Attaching package: 'hypergraph'
The following object(s) are masked from package:Biostrings :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Error: processing vignette 'altcdfenvs.Rnw' failed with diagnostics:
chunk 10
Error in as.double(x) :
cannot coerce type 'S4' to vector of type 'double'
Execution halted