altcdfenvs 2.0.1
Laurent Gautier
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/altcdfenvs | | Last Changed Rev: 30871 / Revision: 30951 | | Last Changed Date: 2008-04-06 06:27:13 -0700 (Sun, 06 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | [ ERROR ] | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | ERROR | skipped | skipped |
* checking for file 'altcdfenvs/DESCRIPTION' ... OK
* preparing 'altcdfenvs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'altcdfenvs' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: makecdfenv
Loading required package: Biostrings
Loading required package: hypergraph
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from package:Biostrings :
complement
Attaching package: 'hypergraph'
The following object(s) are masked from package:Biostrings :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "toHypergraph" no definition for class: "CdfEnvAffy"
Creating a new generic function for "plot" in "altcdfenvs"
** help
Note: removing empty section \description
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \section{Warning}
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \value
>>> Building/Updating help pages for package 'altcdfenvs'
Formats: text html latex example
AffyProbesMatch-class text html latex example
CdfEnvAffy-class text html latex example
appendCdfEnvAffy text html latex example
cdfenv text html latex example
cdfenvEx text html latex example
copyCdfEnvAffy text html latex
countduplicated text html latex
geneNames text html latex
getxy.probeseq text html latex example
index2xy text html latex example
indexProbes.CdfEnvAffy text html latex
matchAffyProbes text html latex example
missing link(s): buildCdfEnv.biostrings
plot.CdfEnvAffy text html latex example
removeIndex text html latex example
unique.CdfEnvAffy text html latex example
utils.FASTA text html latex example
validAffyBatch text html latex example
** building package indices ...
* DONE (altcdfenvs)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: makecdfenv
Loading required package: Biostrings
Loading required package: hypergraph
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from package:Biostrings :
complement
Attaching package: 'hypergraph'
The following object(s) are masked from package:Biostrings :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Error: processing vignette 'altcdfenvs.Rnw' failed with diagnostics:
chunk 10
Error in as.double(x) :
cannot coerce type 'S4' to vector of type 'double'
Execution halted