KEGGSOAP 1.13.0
Robert Gentleman
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGSOAP | | Last Changed Rev: 29533 / Revision: 30951 | | Last Changed Date: 2008-01-14 21:18:54 -0800 (Mon, 14 Jan 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/KEGGSOAP.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'KEGGSOAP/DESCRIPTION' ... OK
* this is package 'KEGGSOAP' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'KEGGSOAP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... WARNING
Error in paste(normalizePath(file.path(libname, pkgname, "libs")), file.path(Sys.getenv("R_HOME"), :
could not find function "normalizePath"
Error: .onLoad failed in 'loadNamespace' for 'XML'
Execution halted
A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating KEGGSOAP-Ex.R ... OK
* checking examples ... OK
* creating KEGGSOAP-manual.tex ... OK
* checking KEGGSOAP-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.2-bioc/meat/KEGGSOAP.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/KEGGSOAP.Rcheck
---------- Making package KEGGSOAP ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
preparing package KEGGSOAP for lazy loading
Loading required package: XML
Loading required package: SSOAP
Loading required package: RCurl
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'KEGGSOAP'
Formats: text html latex example chm
KEGGserver text html latex chm
bget text html latex example chm
get.genes.by.motifs text html latex example chm
get.genes.by.organism text html latex example chm
get.genes.by.pathway text html latex example chm
get.motifs.by.gene text html latex example chm
get.paralogs.by.gene text html latex example chm
get.pathways.by.genes text html latex example chm
getBestNeighbors text html latex example chm
list.organisms text html latex example chm
mark.pathway.by.objects text html latex example chm
search.compounds.by.name text html latex example chm
search.glycans.by.name text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\KEGGSOAP.Rcheck\00_pkg_src\KEGGSOAP\chm\KEGGSOAP.chm
Compile time: 0 minutes, 0 seconds
14 Topics
64 Local links
15 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\KEGGSOAP.Rcheck\00_pkg_src\KEGGSOAP\chm\KEGGSOAP.chm, 35,197 bytes
Compression decreased file by 30,972 bytes.
adding MD5 sums
* DONE (KEGGSOAP)