BioC experimental data: CHECK report for KEGGdzPathwaysGEO on zin1

Package: KEGGdzPathwaysGEO

Version: 1.1.3

Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.1.3.tar.gz

StartedAt: 2014-04-04 09:26:11 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 09:32:34 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 383.3 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.1.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [1s/5s] OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s/7s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.092	0.012	0.119
GSE14762	0.224	0.012	0.302
GSE15471	0.400	0.020	0.533
GSE16515	0.208	0.012	0.249
GSE18842	0.428	0.020	0.569
GSE19188	0.632	0.024	0.848
GSE19728	0.136	0.004	0.139
GSE20153	0.112	0.004	0.363
GSE20291	0.068	0.008	0.207
GSE21354	0.120	0.000	0.178
GSE3467	0.132	0.000	0.159
GSE3585	0.044	0.000	0.045
GSE3678	0.116	0.000	0.124
GSE4107	0.140	0.004	0.185
GSE5281_EC	0.132	0.000	0.155
GSE5281_HIP	0.140	0.000	0.167
GSE5281_VCX	0.172	0.000	0.210
GSE6956AA	0.044	0.000	0.044
GSE6956C	0.048	0.000	0.051
GSE781	0.052	0.000	0.060
GSE8671	0.284	0.008	0.405
GSE8762	0.160	0.004	0.186
GSE9348	0.352	0.004	0.741
GSE9476	0.120	0.004	0.238
KEGGdzPathwaysGEO-package	0.328	0.024	0.353