BioC experimental data: CHECK report for KEGGdzPathwaysGEO on perceval

Package: KEGGdzPathwaysGEO

Version: 1.1.3

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch KEGGdzPathwaysGEO_1.1.3.tar.gz

StartedAt: 2014-04-04 11:14:58 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 11:23:22 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 504.2 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.1.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [3s/7s] OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [7s/8s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.119	0.007	0.153
GSE14762	0.245	0.017	0.262
GSE15471	0.449	0.054	0.505
GSE16515	0.232	0.031	0.264
GSE18842	0.501	0.063	0.566
GSE19188	0.761	0.116	0.886
GSE19728	0.159	0.019	0.178
GSE20153	0.133	0.020	0.154
GSE20291	0.091	0.015	0.107
GSE21354	0.142	0.021	0.164
GSE3467	0.152	0.027	0.199
GSE3585	0.051	0.007	0.059
GSE3678	0.132	0.021	0.153
GSE4107	0.161	0.021	0.204
GSE5281_EC	0.163	0.028	0.210
GSE5281_HIP	0.165	0.023	0.190
GSE5281_VCX	0.200	0.031	0.233
GSE6956AA	0.052	0.017	0.070
GSE6956C	0.058	0.009	0.068
GSE781	0.065	0.016	0.082
GSE8671	0.353	0.054	0.409
GSE8762	0.179	0.031	0.212
GSE9348	0.439	0.077	0.519
GSE9476	0.145	0.030	0.175
KEGGdzPathwaysGEO-package	0.416	0.058	0.474