BioC experimental data: CHECK report for pRolocdata on perceval
This page was generated on 2014-04-04 17:29:19 -0700 (Fri, 04 Apr 2014).
pRolocdata 1.0.3 Laurent Gatto
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/pRolocdata | Last Changed Rev: 2533 / Revision: 2768 | Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | [ OK ] | OK |
Summary
Package: pRolocdata |
Version: 1.0.3 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch pRolocdata_1.0.3.tar.gz |
StartedAt: 2014-04-04 11:34:51 -0700 (Fri, 04 Apr 2014) |
EndedAt: 2014-04-04 11:38:46 -0700 (Fri, 04 Apr 2014) |
EllapsedTime: 234.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: pRolocdata.Rcheck |
Warnings: 0 |
Command output
* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.0.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... [14s/33s] OK
* checking installed package size ... NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
extdata 7.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘MSnbase’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [20s/21s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
hall2009 9.197 0.346 9.545
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/Users/biocbuild/bbs-2.13-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.
pRolocdata.Rcheck/00install.out:
* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning in fun(libname, pkgname) :
mzR has been built against a different Rcpp version (0.11.0)
than is installed on your system (0.11.1). This might lead to errors
when loading mzR. If you encounter such issues, please send
a report, including the output of sessionInfo() to the Bioc
mailing list -- http://www.bioconductor.org/help/mailing-list.
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning in fun(libname, pkgname) :
mzR has been built against a different Rcpp version (0.11.0)
than is installed on your system (0.11.1). This might lead to errors
when loading mzR. If you encounter such issues, please send
a report, including the output of sessionInfo() to the Bioc
mailing list -- http://www.bioconductor.org/help/mailing-list.
* DONE (pRolocdata)
pRolocdata.Rcheck/pRolocdata-Ex.timings:
name | user | system | elapsed
|
andy2011 | 0.089 | 0.010 | 0.097 |
|
at_chloro | 0.200 | 0.013 | 0.213 |
|
dunkley2006 | 0.042 | 0.005 | 0.046 |
|
foster2006 | 0.054 | 0.004 | 0.059 |
|
hall2009 | 9.197 | 0.346 | 9.545 |
|
nikolovski2012 | 0.806 | 0.057 | 0.885 |
|
pRolocdata | 0.017 | 0.021 | 0.088 |
|
tan2009 | 0.041 | 0.009 | 0.048 |
|
trotter2010 | 0.796 | 0.059 | 1.013 |
|