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Package 73/658HostnameOS / ArchBUILDCHECKBUILD BIN
BiocParallel 0.0.12
Bioconductor Package Maintainer
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocParallel
Last Changed Rev: 73871 / Revision: 74774
Last Changed Date: 2013-03-01 17:45:14 -0800 (Fri, 01 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64 [ OK ] WARNINGS  OK 

Summary

Package: BiocParallel
Version: 0.0.12
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel
StartedAt: 2013-03-25 01:23:10 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:23:19 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 8.8 seconds
RetCode: 0
Status:  OK 
PackageFile: BiocParallel_0.0.12.tar.gz
PackageFileSize: 123.5 KiB

Command output

* checking for file 'BiocParallel/DESCRIPTION' ... OK
* preparing 'BiocParallel':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012)
 \write18 enabled.
entering extended mode
(/private/tmp/RtmpOKeHNg/Rbuild117e96404a95f/BiocParallel/.Rd2pdf71657/Rd2.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
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c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h
ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma
rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, 
kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk,
 polish, portuguese, romanian, romansh, russian, sanskrit, serbian, serbianc, s
lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, 
welsh, loaded.
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
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NOT loading lmodern
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Package hyperref Message: Driver (autodetected): hpdftex.

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Package hyperref Warning: Option `hyperindex' has already been used,
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Package hyperref Warning: Option `pagebackref' has already been used,
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Writing index file Rd2.idx
No file Rd2.aux.
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/t1ptm.fd)
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[]\T1/ptm/m/n/10 See \T1/fi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/fi4/m/n/10 method?bplapply("MulticoreParam")\T1/
ptm/m/n/10 . 
[4] (/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def) [5]
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[]\T1/fi4/m/n/10 logical(1) \T1/ptm/m/n/10 in-di-cat-ing whether forked chil-dr
en will be ter-mi-nated be-fore \T1/fi4/m/n/10 bplapply
[9] (/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (1.9087pt too wide) in paragraph at lines 712--715
[]\T1/ptm/m/n/10 Make this the de-fault \T1/fi4/m/n/10 BiocParallelParam \T1/pt
m/m/n/10 for sub-se-quent eval-u-a-tions? If \T1/fi4/m/n/10 FALSE\T1/ptm/m/n/10
 ,
[10] (/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def) [11]
Overfull \hbox (4.73901pt too wide) in paragraph at lines 897--900
[]\T1/ptm/m/n/10 Use \T1/fi4/m/n/10 as(cl, "SnowParam") \T1/ptm/m/n/10 to co-er
ce a clus-ter cre-ated di-rectly by \T1/fi4/m/n/10 parallel::param \T1/ptm/m/n/
10 to a \T1/fi4/m/n/10 SnowParam
[12]
No file Rd2.ind.
[13] (./Rd2.aux)

Package rerunfilecheck Warning: File `Rd2.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

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(see the transcript file for additional information)pdfTeX warning (dest): name
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pdfTeX warning (dest): name{Rfn.makeCluster} has been referenced but does not e
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pdfTeX warning (dest): name{Rfn.pvec} has been referenced but does not exist, r
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pdfTeX warning (dest): name{Rfn.mclapply} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lapply} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.DoparParam} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.parallel} has been referenced but does not exis
t, replaced by a fixed one

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Output written on Rd2.pdf (13 pages, 94162 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2012] (kpathsea + Thai support).
Scanning input file ./Rd2.idx....done (122 entries accepted, 1 rejected).
Sorting entries....done (953 comparisons).
Generating output file ./Rd2.ind....done (186 lines written, 0 warnings).
Output written in ./Rd2.ind.
Transcript written in ./Rd2.ilg.
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012)
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(/private/tmp/RtmpOKeHNg/Rbuild117e96404a95f/BiocParallel/.Rd2pdf71657/Rd2.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
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c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h
ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma
rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, 
kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk,
 polish, portuguese, romanian, romansh, russian, sanskrit, serbian, serbianc, s
lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, 
welsh, loaded.
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(/usr/local/texlive/2012/texmf-dist/tex/latex/base/inputenc.sty
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Writing index file Rd2.idx
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(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/t1ptm.fd)
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[4] (/usr/local/texlive/2012/texmf-dist/tex/latex/base/utf8.def) [5]
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[]\T1/fi4/m/n/10 logical(1) \T1/ptm/m/n/10 in-di-cat-ing whether forked chil-dr
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[]\T1/ptm/m/n/10 Use \T1/fi4/m/n/10 as(cl, "SnowParam") \T1/ptm/m/n/10 to co-er
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 )
(see the transcript file for additional information)pdfTeX warning (dest): name
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pdfTeX warning (dest): name{Rfn.makeCluster} has been referenced but does not e
xist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pvec} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.mclapply} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lapply} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.DoparParam} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.parallel} has been referenced but does not exis
t, replaced by a fixed one

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Output written on Rd2.pdf (15 pages, 111429 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2012] (kpathsea + Thai support).
Scanning input file ./Rd2.idx....done (122 entries accepted, 1 rejected).
Sorting entries....done (943 comparisons).
Generating output file ./Rd2.ind....done (187 lines written, 0 warnings).
Output written in ./Rd2.ind.
Transcript written in ./Rd2.ilg.
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012)
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LaTeX2e <2011/06/27>
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[]\T1/ptm/m/n/10 See \T1/fi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/fi4/m/n/10 method?bplapply("MulticoreParam")\T1/
ptm/m/n/10 . 
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[]\T1/fi4/m/n/10 logical(1) \T1/ptm/m/n/10 in-di-cat-ing whether forked chil-dr
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[]\T1/ptm/m/n/10 Make this the de-fault \T1/fi4/m/n/10 BiocParallelParam \T1/pt
m/m/n/10 for sub-se-quent eval-u-a-tions? If \T1/fi4/m/n/10 FALSE\T1/ptm/m/n/10
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[]\T1/ptm/m/n/10 Use \T1/fi4/m/n/10 as(cl, "SnowParam") \T1/ptm/m/n/10 to co-er
ce a clus-ter cre-ated di-rectly by \T1/fi4/m/n/10 parallel::param \T1/ptm/m/n/
10 to a \T1/fi4/m/n/10 SnowParam
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