Package: BiocParallel

Version: 0.2.0

Command: rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocParallel.buildbin-libdir BiocParallel_0.2.0.tar.gz >BiocParallel-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=BiocParallel.buildbin-libdir --install="check:BiocParallel-install.out" --force-multiarch --no-vignettes --timings BiocParallel_0.2.0.tar.gz && mv BiocParallel.buildbin-libdir/* BiocParallel.Rcheck/ && rmdir BiocParallel.buildbin-libdir

StartedAt: 2013-04-04 05:06:39 -0700 (Thu, 04 Apr 2013)

EndedAt: 2013-04-04 05:07:45 -0700 (Thu, 04 Apr 2013)

EllapsedTime: 66.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: BiocParallel.Rcheck

Warnings: 2

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/BiocParallel.Rcheck'
* using R version 3.0.0 (2013-04-03)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocParallel/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BiocParallel' version '0.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocParallel' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'E:/biocbld/bbs-2.12-bioc/tmpdir/Rtmpq6Jzee/R.INSTALL1920357a3ccb/BiocParallel/man/bpcontrols.Rd':
  'DoparParam'

Missing link or links in documentation object 'E:/biocbld/bbs-2.12-bioc/tmpdir/Rtmpq6Jzee/R.INSTALL1920357a3ccb/BiocParallel/man/bpschedule.Rd':
  'DoparParam'

Missing link or links in documentation object 'E:/biocbld/bbs-2.12-bioc/tmpdir/Rtmpq6Jzee/R.INSTALL1920357a3ccb/BiocParallel/man/register.Rd':
  'DoparParam'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'DoparParam'
Undocumented S4 classes:
  'DoparParam'
Undocumented S4 methods:
  generic 'bpisup' and siglist 'DoparParam'
  generic 'bplapply' and siglist 'ANY,DoparParam'
  generic 'bpworkers' and siglist 'DoparParam'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [13s] OK
** running examples for arch 'x64' ... [13s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'test.R' [6s]
 [6s] OK
** running tests for arch 'x64'
  Running 'test.R' [6s]
 [6s] OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
See
  'E:/biocbld/bbs-2.12-bioc/meat/BiocParallel.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'BiocParallel' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'BiocParallel' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_0.2.0.zip
* DONE (BiocParallel)