Package: ensemblVEP

Version: 0.99.14

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings ensemblVEP_0.99.14.tar.gz

StartedAt: 2013-03-25 01:23:59 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:32:09 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 489.7 seconds

RetCode: 0

Status:  OK

CheckDir: ensemblVEP.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/ensemblVEP.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ensemblVEP/DESCRIPTION’ ... OK
* this is package ‘ensemblVEP’ version ‘0.99.14’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ensemblVEP’ can be installed ... [35s/37s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘ensemblVEP/R/zzz.R’:
  .onLoad calls:
    packageStartupMessage(msg)

See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [26s/74s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
ensemblVEP        3.796  0.548  35.691
parseCSQToGRanges 1.248  0.184  17.112
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘runTests.R’ [24s/48s]
 [25s/48s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/ensemblVEP.Rcheck/00check.log’
for details.

* installing *source* package ‘ensemblVEP’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘ensemblVEP.Rnw’ 
** testing if installed package can be loaded
* DONE (ensemblVEP)

name	user	system	elapsed
VEPParam-class	0.760	0.044	0.807
ensemblVEP	3.796	0.548	35.691
parseCSQToGRanges	1.248	0.184	17.112