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Package 449/565HostnameOS / ArchBUILDCHECKBUILD BIN
RchyOptimyx 1.1.2
Adrin Jalali , Nima Aghaeepour
Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RchyOptimyx
Last Changed Rev: 66443 / Revision: 66885
Last Changed Date: 2012-06-05 15:18:11 -0700 (Tue, 05 Jun 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: RchyOptimyx
Version: 1.1.2
Command: rm -rf RchyOptimyx.buildbin-libdir && mkdir RchyOptimyx.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RchyOptimyx_1.1.2.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R RchyOptimyx.buildbin-libdir
StartedAt: 2012-06-21 05:13:20 -0700 (Thu, 21 Jun 2012)
EndedAt: 2012-06-21 05:14:01 -0700 (Thu, 21 Jun 2012)
EllapsedTime: 40.8 seconds
RetCode: 0
Status:  OK 
PackageFile: RchyOptimyx_1.1.2.tgz
PackageFileSize: 973 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=RchyOptimyx.buildbin-libdir RchyOptimyx_1.1.2.tar.gz'
>>>>>>> 

* installing *source* package 'RchyOptimyx' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c RchyOptimyx.cpp -o RchyOptimyx.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c dataRead.cpp -o dataRead.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c mystring.cpp -o mystring.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c numberGenerator.cpp -o numberGenerator.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RchyOptimyx.so RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'RchyOptimyx'
Creating a new generic function for 'merge' in package 'RchyOptimyx'
** help
*** installing help indices
** building package indices
** installing vignettes
   'RchyOptimyx.Rnw' 
** testing if installed package can be loaded

* DONE (RchyOptimyx)


>>>>>>> 
>>>>>>> FIXING LINKS FOR RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/i386/RchyOptimyx.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/i386/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/i386/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/i386/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/i386/RchyOptimyx.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=RchyOptimyx.buildbin-libdir --libs-only RchyOptimyx_1.1.2.tar.gz'
>>>>>>> 

* installing *source* package 'RchyOptimyx' ...
** libs
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c RchyOptimyx.cpp -o RchyOptimyx.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c dataRead.cpp -o dataRead.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c mystring.cpp -o mystring.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c numberGenerator.cpp -o numberGenerator.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RchyOptimyx.so RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/ppc

* DONE (RchyOptimyx)


>>>>>>> 
>>>>>>> FIXING LINKS FOR RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/ppc/RchyOptimyx.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/ppc/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/ppc/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/ppc/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/ppc/RchyOptimyx.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=RchyOptimyx.buildbin-libdir --libs-only RchyOptimyx_1.1.2.tar.gz'
>>>>>>> 

* installing *source* package 'RchyOptimyx' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c RchyOptimyx.cpp -o RchyOptimyx.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c dataRead.cpp -o dataRead.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c mystring.cpp -o mystring.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c numberGenerator.cpp -o numberGenerator.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RchyOptimyx.so RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x86_64

* DONE (RchyOptimyx)


>>>>>>> 
>>>>>>> FIXING LINKS FOR RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x86_64/RchyOptimyx.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x86_64/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x86_64/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x86_64/RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x86_64/RchyOptimyx.so"