Package: RMassBank

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R --arch x86_64 CMD check --no-vignettes --timings --no-multiarch RMassBank_1.0.0.tar.gz

StartedAt: 2013-03-24 01:09:40 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 01:11:37 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 117.6 seconds

RetCode: 0

Status:  OK

CheckDir: RMassBank.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/RMassBank.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RMassBank/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RMassBank' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RMassBank' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'RMassBank' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'RMassBank.Rnw' 
** testing if installed package can be loaded

* DONE (RMassBank)

name	user	system	elapsed
RmbDefaultSettings	0.009	0.003	0.012
add.formula	0.003	0.000	0.003
addPeaks	0	0	0
aggregateSpectra	0.000	0.000	0.001
analyzeMsMs	0.000	0.001	0.000
archiveResults	0.001	0.001	0.003
cleanElnoise	0	0	0
compileRecord	0.000	0.000	0.001
createMolfile	0	0	0
dbe	0.001	0.001	0.002
deprofile	0	0	0
exportMassbank	0	0	0
filterLowaccResults	0	0	0
filterMultiplicity	0	0	0
filterPeakSatellites	0	0	0
filterPeaksMultiplicity	0	0	0
findMass	2.161	0.403	2.213
findMsMsHR	0.000	0.001	0.000
findMz	0	0	0
findMz.formula	0.026	0.001	0.027
flatten	0	0	0
formulastring.to.list	0.001	0.000	0.001
gatherCompound	0	0	0
gatherData	0.000	0.001	0.000
getCactus	0.021	0.002	0.508
getCtsRecord	0.173	0.004	2.108
getMolecule	0.093	0.006	0.069
getPcId	0.010	0.001	0.256
is.valid.formula	0.001	0.000	0.001
loadInfolists	0.000	0.000	0.001
loadList	0	0	0
makeMollist	0	0	0
makeRecalibration	0	0	0
mbWorkflow	0	0	0
order.formula	0.002	0.001	0.003
ppm	0.000	0.001	0.001
problematicPeaks	0	0	0
reanalyzeFailpeaks	0	0	0
recalibrate	0.000	0.000	0.001
recalibrate.addMS1data	0	0	0
to.limits.rcdk	0.002	0.001	0.002
toMassbank	0.000	0.000	0.001