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Package 64/599HostnameOS / ArchBUILDCHECKBUILD BIN
BigMatrix 0.99.0
Peter M. Haverty
Snapshot Date: 2012-09-22 16:21:42 -0700 (Sat, 22 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BigMatrix
Last Changed Rev: 69381 / Revision: 69699
Last Changed Date: 2012-09-12 11:57:22 -0700 (Wed, 12 Sep 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: BigMatrix
Version: 0.99.0
Command: rm -rf BigMatrix.buildbin-libdir && mkdir BigMatrix.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BigMatrix.buildbin-libdir BigMatrix_0.99.0.tar.gz >BigMatrix-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=BigMatrix.buildbin-libdir --install="check:BigMatrix-install.out" --force-multiarch --no-vignettes --timings BigMatrix_0.99.0.tar.gz && mv BigMatrix.buildbin-libdir/* BigMatrix.Rcheck/ && rmdir BigMatrix.buildbin-libdir
StartedAt: 2012-09-23 00:05:58 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 00:07:07 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 68.8 seconds
RetCode: 0
Status:  OK  
CheckDir: BigMatrix.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/BigMatrix.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BigMatrix/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BigMatrix' version '0.99.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'BigMatrix' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'prove.R'
  Comparing 'prove.Rout' to 'prove.Rout.save' ...10,13c10,16
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpuCBpvr/file190050a54a3b.desc.rds ...
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpuCBpvr/file190065763f2e.desc.rds ...
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpuCBpvr/file190065763f2e.desc.rds ...
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpuCBpvr/file190065763f2e.desc.rds ...
---
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file508557463e5e.desc.rds ...
> Note: no visible binding for global variable 'description' 
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
36c39
< RUNIT TEST PROTOCOL -- Sun Sep 23 00:06:57 2012 
---
> RUNIT TEST PROTOCOL -- Mon Sep 10 15:44:56 2012 
 OK
** running tests for arch 'x64'
  Running 'prove.R'
  Comparing 'prove.Rout' to 'prove.Rout.save' ...10,13c10,16
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpaGkMaz/file5d862164ebf.desc.rds ...
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpaGkMaz/file5d86e126603.desc.rds ...
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpaGkMaz/file5d86e126603.desc.rds ...
< Attaching to on-disk data: D:\biocbld\bbs-2.11-bioc\tmpdir\RtmpaGkMaz/file5d86e126603.desc.rds ...
---
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file508557463e5e.desc.rds ...
> Note: no visible binding for global variable 'description' 
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
36c39
< RUNIT TEST PROTOCOL -- Sun Sep 23 00:07:02 2012 
---
> RUNIT TEST PROTOCOL -- Mon Sep 10 15:44:56 2012 
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BigMatrix.Rcheck/00install.out:


install for i386

* installing *source* package 'BigMatrix' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'levels' from package 'base' in package 'BigMatrix'
Creating a generic function for 'nlevels' from package 'base' in package 'BigMatrix'
Note: no visible binding for '<<-' assignment to '.->.bm' 
Note: no visible binding for '<<-' assignment to '.->descpath' 
Note: no visible binding for '<<-' assignment to '.->.bm' 
Note: no visible binding for '<<-' assignment to '.->descpath' 
Note: no visible binding for '<<-' assignment to '.->levels' 
** help
*** installing help indices
** building package indices
** installing vignettes
   'BigMatrix.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'BigMatrix' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BigMatrix' as BigMatrix_0.99.0.zip

* DONE (BigMatrix)