BigMatrix 0.99.0
Peter M. Haverty
| Snapshot Date: 2012-09-22 16:21:42 -0700 (Sat, 22 Sep 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BigMatrix | | Last Changed Rev: 69381 / Revision: 69699 | | Last Changed Date: 2012-09-12 11:57:22 -0700 (Wed, 12 Sep 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | [ OK ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/BigMatrix.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BigMatrix/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BigMatrix’ version ‘0.99.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘BigMatrix’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘prove.R’
Comparing ‘prove.Rout’ to ‘prove.Rout.save’ ...10,15c10,16
< Attaching to on-disk data: /tmp/RtmpGDzkDs/file51572367930e.desc.rds ...
< Attaching to on-disk data: /tmp/RtmpGDzkDs/file51575c64ee84.desc.rds ...
< Attaching to on-disk data: /tmp/RtmpGDzkDs/file51575c64ee84.desc.rds ...
< Attaching to on-disk data: /tmp/RtmpGDzkDs/file51575c64ee84.desc.rds ...
< Attaching to on-disk data: /tmp/RtmpGDzkDs/file51575c64ee84.desc.rds ...
< Attaching to on-disk data: /tmp/RtmpGDzkDs/file51575c64ee84.desc.rds ...
---
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file508557463e5e.desc.rds ...
> Note: no visible binding for global variable 'description'
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
38c39
< RUNIT TEST PROTOCOL -- Sat Sep 22 23:09:09 2012
---
> RUNIT TEST PROTOCOL -- Mon Sep 10 15:44:56 2012
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘BigMatrix’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘levels’ from package ‘base’ in package ‘BigMatrix’
Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘BigMatrix’
Note: no visible binding for '<<-' assignment to '.->.bm'
Note: no visible binding for '<<-' assignment to '.->descpath'
Note: no visible binding for '<<-' assignment to '.->.bm'
Note: no visible binding for '<<-' assignment to '.->descpath'
Note: no visible binding for '<<-' assignment to '.->levels'
** help
*** installing help indices
** building package indices
** installing vignettes
‘BigMatrix.Rnw’
** testing if installed package can be loaded
* DONE (BigMatrix)