Package: miRNATarget

Version: 0.99.1

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_0.99.1.tar.gz

StartedAt: 2012-09-23 12:52:54 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 12:54:24 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 89.7 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.10-data-experiment/meat/miRNATarget.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '0.99.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'miRNATarget' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.1Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.10-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   'miRNATarget.Rnw' 
** testing if installed package can be loaded

* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.025	0.004	0.029
HS_refseq_to_affy_hc_g110	0.010	0.001	0.011
HS_refseq_to_affy_hg_focus	0.044	0.002	0.047
HS_refseq_to_affy_hg_u133_plus_2	0.158	0.006	0.164
HS_refseq_to_affy_hg_u133a	0.092	0.003	0.095
HS_refseq_to_affy_hg_u133a_2	0.094	0.003	0.097
HS_refseq_to_affy_hg_u133b	0.050	0.002	0.052
HS_refseq_to_affy_hg_u95a	0.061	0.003	0.064
HS_refseq_to_affy_hg_u95av2	0.064	0.002	0.066
HS_refseq_to_affy_hg_u95b	0.035	0.002	0.037
HS_refseq_to_affy_hg_u95c	0.026	0.002	0.029
HS_refseq_to_affy_hg_u95d	0.013	0.001	0.014
HS_refseq_to_affy_hg_u95e	0.023	0.001	0.025
HS_refseq_to_affy_huex_1_0_st_v2	2.752	0.066	2.820
HS_refseq_to_affy_hugene_1_0_st_v1	0.187	0.007	0.194
HS_refseq_to_affy_hugenefl	0.055	0.002	0.057
HS_refseq_to_affy_u133_x3p	0.377	0.010	0.388
HS_refseq_to_agilent_cgh_44b	0.030	0.002	0.031
HS_refseq_to_agilent_wholegenome	0.111	0.003	0.115
HS_refseq_to_canonical_transcript_stable_id	0.107	0.003	0.110
HS_refseq_to_ccds	0.079	0.003	0.081
HS_refseq_to_codelink	0.091	0.002	0.094
HS_refseq_to_embl	0.507	0.012	0.520
HS_refseq_to_ensembl_gene_id	0.105	0.003	0.108
HS_refseq_to_ensembl_peptide_id	0.134	0.004	0.137
HS_refseq_to_ensembl_transcript_id	0.140	0.004	0.144
HS_refseq_to_entrezgene	0.098	0.003	0.101
HS_refseq_to_hgnc_id	0.094	0.003	0.097
HS_refseq_to_hgnc_symbol	0.103	0.003	0.106
HS_refseq_to_hgnc_transcript_name	0.137	0.003	0.141
HS_refseq_to_illumina_humanht_12	0.129	0.004	0.132
HS_refseq_to_illumina_humanwg_6_v1	0.107	0.003	0.110
HS_refseq_to_illumina_humanwg_6_v2	0.103	0.004	0.106
HS_refseq_to_illumina_humanwg_6_v3	0.123	0.003	0.126
HS_refseq_to_interpro	0.294	0.007	0.302
HS_refseq_to_ipi	0.179	0.005	0.185
HS_refseq_to_merops	0.005	0.001	0.006
HS_refseq_to_pdb	0.066	0.002	0.068
HS_refseq_to_pfam	0.105	0.003	0.109
HS_refseq_to_phalanx_onearray	0.109	0.004	0.112
HS_refseq_to_protein_id	0.476	0.013	0.490
HS_refseq_to_refseq_dna	0.091	0.003	0.094
HS_refseq_to_refseq_genomic	0.002	0.000	0.002
HS_refseq_to_refseq_peptide	0.129	0.004	0.131
HS_refseq_to_rfam	0.003	0.001	0.004
HS_refseq_to_rfam_gene_name	0.001	0.000	0.001
HS_refseq_to_rfam_transcript_name	0.001	0.000	0.002
HS_refseq_to_smart	0.071	0.003	0.074
HS_refseq_to_tigrfam	0.008	0.001	0.009
HS_refseq_to_ucsc	0.125	0.006	0.131
HS_refseq_to_unigene	0.218	0.005	0.224
HS_refseq_to_uniprot_genename	0.142	0.003	0.146
HS_refseq_to_wikigene_name	0.102	0.003	0.105
MM_conv_id	0.005	0.001	0.005
MM_refseq_to_affy_mg_u74a	0.040	0.001	0.041
MM_refseq_to_affy_mg_u74av2	0.039	0.002	0.041
MM_refseq_to_affy_mg_u74b	0.029	0.002	0.030
MM_refseq_to_affy_mg_u74bv2	0.032	0.002	0.034
MM_refseq_to_affy_mg_u74c	0.009	0.001	0.010
MM_refseq_to_affy_mg_u74cv2	0.014	0.001	0.016
MM_refseq_to_affy_moe430a	0.088	0.004	0.092
MM_refseq_to_affy_moe430b	0.219	0.003	0.222
MM_refseq_to_affy_moex_1_0_st_v1	1.873	0.047	1.920
MM_refseq_to_affy_mogene_1_0_st_v1	0.102	0.004	0.106
MM_refseq_to_affy_mouse430_2	0.110	0.003	0.114
MM_refseq_to_affy_mouse430a_2	0.076	0.002	0.078
MM_refseq_to_affy_mu11ksuba	0.024	0.001	0.025
MM_refseq_to_affy_mu11ksubb	0.016	0.001	0.017
MM_refseq_to_agilent_wholegenome	0.092	0.003	0.094
MM_refseq_to_canonical_transcript_stable_id	0.091	0.003	0.094
MM_refseq_to_ccds	0.073	0.003	0.076
MM_refseq_to_codelink	0.073	0.003	0.076
MM_refseq_to_embl	0.331	0.009	0.341
MM_refseq_to_ensembl_gene_id	0.163	0.005	0.169
MM_refseq_to_ensembl_peptide_id	0.088	0.005	0.092
MM_refseq_to_ensembl_transcript_id	0.091	0.004	0.095
MM_refseq_to_entrezgene	0.087	0.003	0.089
MM_refseq_to_fantom	0.118	0.003	0.122
MM_refseq_to_illumina_mousewg_6_v1	0.221	0.004	0.225
MM_refseq_to_illumina_mousewg_6_v2	0.114	0.003	0.118
MM_refseq_to_interpro	0.339	0.006	0.346
MM_refseq_to_ipi	0.115	0.004	0.118
MM_refseq_to_merops	0.004	0.001	0.005
MM_refseq_to_mgi_id	0.079	0.002	0.082
MM_refseq_to_mgi_symbol	0.082	0.002	0.085
MM_refseq_to_mgi_transcript_name	0.087	0.003	0.090
MM_refseq_to_pdb	0.008	0.001	0.009
MM_refseq_to_pfam	0.083	0.002	0.085
MM_refseq_to_phalanx_onearray	0.071	0.002	0.073
MM_refseq_to_protein_id	0.291	0.008	0.299
MM_refseq_to_refseq_dna	0.068	0.002	0.071
MM_refseq_to_refseq_peptide	0.089	0.003	0.093
MM_refseq_to_rfam	0.002	0.001	0.003
MM_refseq_to_rfam_gene_name	0.002	0.001	0.003
MM_refseq_to_rfam_transcript_name	0.002	0.001	0.002
MM_refseq_to_smart	0.053	0.002	0.056
MM_refseq_to_tigrfam	0.006	0.001	0.007
MM_refseq_to_ucsc	0.073	0.003	0.076
MM_refseq_to_unigene	0.115	0.004	0.119
MM_refseq_to_uniprot_genename	0.110	0.004	0.114
MM_refseq_to_wikigene_name	0.087	0.003	0.090
TBL2	3.460	0.161	3.623
TBL2_HS	7.274	0.346	7.642
TBL2_MM	3.102	0.172	3.286
conv_id	0.004	0.001	0.006
id_conv	0.086	0.003	0.089