Package: timecourse

Version: 1.10.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check timecourse_1.10.0.tar.gz

StartedAt: 2008-04-09 17:06:33 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 17:08:52 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 138.8 seconds

RetCode: 0

Status: OK

CheckDir: timecourse.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/timecourse.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'timecourse/DESCRIPTION' ... OK
* this is package 'timecourse' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'timecourse' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mb.2D : <anonymous>: no visible binding for global variable 'n'
mb.2D : <anonymous>: no visible binding for global variable 'T1'
mb.2D : <anonymous>: no visible binding for global variable 'xbar'
mb.2D : <anonymous>: no visible binding for global variable 'modS1'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating timecourse-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating timecourse-manual.tex ... OK
* checking timecourse-manual.tex ... OK

* Installing *source* package 'timecourse' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: limma
Loading required package: MASS
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'timecourse'
     Formats: text html latex example 
  abs2ratio                         text    html    latex
  fruitfly                          text    html    latex
  marrayTC-class                    text    html    latex
  matrix.cov                        text    html    latex
  mb.MANOVA                         text    html    latex   example
  mb.long                           text    html    latex   example
  ot.helmert                        text    html    latex
  plotProfile                       text    html    latex
  univ.func                         text    html    latex
** building package indices ...
* DONE (timecourse)