ppiStats 1.4.1
Tony Chiang
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/ppiStats | | Last Changed Rev: 28113 / Revision: 30966 | | Last Changed Date: 2007-10-21 09:47:13 -0700 (Sun, 21 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ ERROR ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | ERROR | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | ERROR | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.1-bioc/meat/ppiStats.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.4.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
degreeEstimates: no visible global function definition for 'getDegrees'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'ppiStats-Ex.R' failed.
The error most likely occurred in:
> ### * calcInOutDegStats
>
> flush(stderr()); flush(stdout())
>
> ### Name: calcInOutDegStats
> ### Title: This function calculates the various degree statistic for a
> ### Protein-Protein Interaction (PPI) Graph
> ### Aliases: calcInOutDegStats
> ### Keywords: datagen
>
> ### ** Examples
>
> library(ppiData)
> degStat <- calcInOutDegStats(Cagney2001BPGraph)
Error in if (mode == "undirected") if (any(adjMat != t(adjMat))) stop("adjacency matrix must be symmetric for undirected graphs") :
argument is of length zero
Calls: calcInOutDegStats ... new -> initialize -> initialize -> .local -> <Anonymous>
Execution halted
* Installing *source* package 'ppiStats' ...
** R
** inst
** help
>>> Building/Updating help pages for package 'ppiStats'
Formats: text html latex example
assessSymmetry text html latex example
bpMatrix text html latex example
calcInOutDegStats text html latex example
degreeEstimates text html latex example
estErrProbMethodOfMoments text html latex example
genBPGraph text html latex example
hgParams text html latex example
hgTests text html latex example
idProteinErrorType text html latex example
idProteinType text html latex example
nullDistDoublyTestedEdges text html latex example
twPERM text html latex example
** building package indices ...
* DONE (ppiStats)