ppiStats 1.4.1
Tony Chiang
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/ppiStats | | Last Changed Rev: 28113 / Revision: 30966 | | Last Changed Date: 2007-10-21 09:47:13 -0700 (Sun, 21 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ ERROR ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | ERROR | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.4.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
degreeEstimates: no visible global function definition for 'getDegrees'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'ppiStats-Ex.R' failed.
The error most likely occurred in:
> ### * calcInOutDegStats
>
> flush(stderr()); flush(stdout())
>
> ### Name: calcInOutDegStats
> ### Title: This function calculates the various degree statistic for a
> ### Protein-Protein Interaction (PPI) Graph
> ### Aliases: calcInOutDegStats
> ### Keywords: datagen
>
> ### ** Examples
>
> library(ppiData)
> degStat <- calcInOutDegStats(Cagney2001BPGraph)
Error in if (mode == "undirected") if (any(adjMat != t(adjMat))) stop("adjacency matrix must be symmetric for undirected graphs") :
argument is of length zero
Calls: calcInOutDegStats ... new -> initialize -> initialize -> .local -> <Anonymous>
Execution halted
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck
---------- Making package ppiStats ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'ppiStats'
Formats: text html latex example chm
assessSymmetry text html latex example chm
bpMatrix text html latex example chm
calcInOutDegStats text html latex example chm
degreeEstimates text html latex example chm
estErrProbMethodOfMoments text html latex example chm
genBPGraph text html latex example chm
hgParams text html latex example chm
hgTests text html latex example chm
idProteinErrorType text html latex example chm
idProteinType text html latex example chm
nullDistDoublyTestedEdges text html latex example chm
twPERM text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm
HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (ppiStats)