flowCore 1.4.0
Nolwenn Le Meur
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/flowCore | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst614022888
---------- Making package flowCore ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making biexponential.d from biexponential.c
making inPolygon.d from inPolygon.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c biexponential.c -o biexponential.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c inPolygon.c -o inPolygon.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i flowCore_res.rc -o flowCore_res.o
gcc-sjlj -std=gnu99 -shared -s -o flowCore.dll flowCore.def biexponential.o inPolygon.o flowCore_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example chm
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arcsinhTransform text html latex example chm
biexponentialTransform text html latex example chm
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ellipsoidGate text html latex example chm
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HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\flowCore\chm\flowCore.chm
HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package flowCore for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Attaching package: 'rrcov'
The following object(s) are masked from package:stats :
biplot,
predict,
screeplot
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "flowCore"
Creating a new generic function for "colnames<-" in "flowCore"
Creating a new generic function for "nrow" in "flowCore"
Creating a new generic function for "ncol" in "flowCore"
adding MD5 sums
* DONE (flowCore)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'flowCore/unitTests/standardsCompliance/Compensation-ML_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/FCS_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/FCS_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/RUnitScript_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Transformation-ML_ComplianceTests' is empty
* building 'flowCore_1.4.0.tar.gz'