fbat 1.2.0
Weiliang Qiu
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/fbat | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/fbat.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'fbat/DESCRIPTION' ... OK
* this is package 'fbat' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'fbat' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating fbat-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating fbat-manual.tex ... OK
* checking fbat-manual.tex ... OK
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/fbat.Rcheck
---------- Making package fbat ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making FBAT.d from FBAT.c
making register.d from register.c
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c FBAT.c -o FBAT.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c register.c -o register.o
gfortran-sjlj -O3 -c missGFreq.f -o missGFreq.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include -i fbat_res.rc -o fbat_res.o
gcc-sjlj -std=gnu99 -shared -s -o fbat.dll fbat.def FBAT.o register.o missGFreq.o fbat_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lgfortran -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package fbat for lazy loading
Loading required package: MASS
Loading required package: GeneticsBase
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'fbat'
Formats: text html latex example chm
checkMarkers text html latex example chm
checkMendelian text html latex example chm
fbat text html latex example chm
getFounders text html latex example chm
missGFreq text html latex example chm
pedAFreq text html latex example chm
pedFlagHomo text html latex example chm
pedGFreq text html latex example chm
pedHardyWeinberg text html latex example chm
readHapMap text html latex example chm
readLink text html latex example chm
readPed text html latex example chm
sampleInfoCEU text html latex example chm
sampleInfoCHB text html latex example chm
sampleInfoJPT text html latex example chm
sampleInfoYRI text html latex example chm
summaryPvalue text html latex example chm
viewFlagHomo text html latex example chm
viewHW text html latex example chm
viewstat text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\fbat.Rcheck\00_pkg_src\fbat\chm\fbat.chm
Compile time: 0 minutes, 0 seconds
21 Topics
40 Local links
3 Internet links
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\fbat.Rcheck\00_pkg_src\fbat\chm\fbat.chm, 36,813 bytes
Compression decreased file by 42,510 bytes.
adding MD5 sums
* DONE (fbat)