fbat 1.2.0
Weiliang Qiu
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/fbat | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'fbat/DESCRIPTION' ... OK
* preparing 'fbat':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst447200842
---------- Making package fbat ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making FBAT.d from FBAT.c
making register.d from register.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c FBAT.c -o FBAT.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c register.c -o register.o
gfortran-sjlj -O3 -c missGFreq.f -o missGFreq.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i fbat_res.rc -o fbat_res.o
gcc-sjlj -std=gnu99 -shared -s -o fbat.dll fbat.def FBAT.o register.o missGFreq.o fbat_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lgfortran -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package fbat for lazy loading
Loading required package: MASS
Loading required package: GeneticsBase
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'fbat'
Formats: text html latex example chm
checkMarkers text html latex example chm
checkMendelian text html latex example chm
fbat text html latex example chm
getFounders text html latex example chm
missGFreq text html latex example chm
pedAFreq text html latex example chm
pedFlagHomo text html latex example chm
pedGFreq text html latex example chm
pedHardyWeinberg text html latex example chm
readHapMap text html latex example chm
readLink text html latex example chm
readPed text html latex example chm
sampleInfoCEU text html latex example chm
sampleInfoCHB text html latex example chm
sampleInfoJPT text html latex example chm
sampleInfoYRI text html latex example chm
summaryPvalue text html latex example chm
viewFlagHomo text html latex example chm
viewHW text html latex example chm
viewstat text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\fbat\chm\fbat.chm
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (fbat)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'fbat_1.2.0.tar.gz'