cellHTS2 2.2.5
Ligia Bras
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/cellHTS2 | | Last Changed Rev: 28949 / Revision: 30966 | | Last Changed Date: 2007-11-28 07:37:23 -0800 (Wed, 28 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/cellHTS2.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.2.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating cellHTS2-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating cellHTS2-manual.tex ... OK
* checking cellHTS2-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/cellHTS2.Rcheck
---------- Making package cellHTS2 ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'cellHTS2'
Formats: text html latex example chm
Bscore text html latex example chm
Data text html latex chm
ROC-class text html latex example chm
ROC text html latex example chm
annotate text html latex example chm
batch text html latex chm
bdgpbiomart text html latex example chm
cellHTS-class text html latex example chm
cellHTS2 text html latex chm
configurationAsScreenPlot text html latex example chm
configure text html latex example chm
convertOldCellHTS text html latex example chm
convertWellCoordinates text html latex example chm
data-KcViab text html latex example chm
data-KcViabSmall text html latex example chm
data-dualCh text html latex example chm
data-oldKcViabSmall text html latex example chm
getDynamicRange text html latex example chm
getEnVisionRawData text html latex example chm
getMeasureRepAgreement text html latex example chm
getTopTable text html latex example chm
getZfactor text html latex example chm
imageScreen text html latex example chm
intensityFiles text html latex chm
normalizePlates text html latex example chm
oneRowPerId text html latex example chm
plate text html latex chm
plateEffects text html latex chm
plotSpatialEffects text html latex example chm
readHTAnalystData text html latex example chm
readPlateList text html latex example chm
scoreReplicates text html latex example chm
scores2calls text html latex example chm
spatialNormalization text html latex example chm
state text html latex chm
summarizeChannels text html latex example chm
summarizeReplicates text html latex example chm
wellAnno text html latex chm
write.tabdel text html latex example chm
writeReport text html latex example chm
writeTab text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\cellHTS2.Rcheck\00_pkg_src\cellHTS2\chm\cellHTS2.chm
HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package cellHTS2 for lazy loading
Loading required package: prada
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Attaching package: 'rrcov'
The following object(s) are masked from package:stats :
biplot,
predict,
screeplot
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Attaching package: 'survival'
The following object(s) are masked from package:robustbase :
heart
Loading required package: splots
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
adding MD5 sums
* DONE (cellHTS2)