biocViews 1.6.1
Biocore Team c/o BioC user list
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/biocViews | | Last Changed Rev: 28916 / Revision: 30966 | | Last Changed Date: 2007-11-26 15:13:12 -0800 (Mon, 26 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/biocViews.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'biocViews/DESCRIPTION' ... OK
* this is package 'biocViews' version '1.6.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biocViews' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating biocViews-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biocViews-manual.tex ... OK
* checking biocViews-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/biocViews.Rcheck
---------- Making package biocViews ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'biocViews'
Formats: text html latex example chm
BiocView-class text html latex chm
Htmlized-class text html latex chm
PackageDetail-class text html latex example chm
RepositoryDetail-class text html latex chm
biocViewsVocab text html latex example chm
extractVignettes text html latex chm
genReposControlFiles text html latex chm
getBiocSubViews text html latex example chm
getBiocViews text html latex example chm
getPacksAndViews text html latex chm
getSubTerms text html latex example chm
htmlDoc text html latex chm
htmlFilename text html latex chm
htmlValue text html latex chm
writeBiocViews text html latex chm
writeHtmlDoc text html latex chm
writePackageDetailHtml text html latex chm
writeRepositoryHtml text html latex chm
writeTopLevelView text html latex chm
write_REPOSITORY text html latex chm
write_SYMBOLS text html latex chm
write_VIEWS text html latex chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\biocViews.Rcheck\00_pkg_src\biocViews\chm\biocViews.chm
HHC4016: Warning: Cannot open "c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package biocViews for lazy loading
Loading required package: tools
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
adding MD5 sums
* DONE (biocViews)