arrayMagic 1.16.1
Andreas Buness
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/arrayMagic | | Last Changed Rev: 28793 / Revision: 30966 | | Last Changed Date: 2007-11-16 14:13:10 -0800 (Fri, 16 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.1-bioc/meat/arrayMagic.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'arrayMagic/DESCRIPTION' ... OK
* this is package 'arrayMagic' version '1.16.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayMagic' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.imageMatrix':
plot.imageMatrix
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating arrayMagic-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating arrayMagic-manual.tex ... OK
* checking arrayMagic-manual.tex ... OK
* Installing *source* package 'arrayMagic' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
Note: unmatched right brace in 'readpDataSlides' on or after line 63
>>> Building/Updating help pages for package 'arrayMagic'
Formats: text html latex example
arrayData-class text html latex example
cbind.arrayData text html latex example
cbind.exprSetRG text html latex example
colCors text html latex example
controlledApply text html latex example
controlledSubsetting text html latex example
detectReplicas text html latex example
exprSetRG-class text html latex example
fdc text html latex example
interweave text html latex example
normalise text html latex example
plot.imageMatrix text html latex example
plotDistributions text html latex example
processArrayData text html latex example
processArrayDataObject text html latex example
qualityDiagnostics text html latex example
qualityParameters text html latex example
readIntensities text html latex example
readpDataSlides text html latex example
removeSpots text html latex example
simpleApply text html latex example
slideMerge text html latex example
spatialLayout text html latex example
spotMerge text html latex example
visualiseHybridisations text html latex example
visualiseQualityParameters text html latex example
write.htmltable text html latex example
writeToFile text html latex example
** building package indices ...
* DONE (arrayMagic)