Back to the "Multiple platform build/check report"

Package 172/234HostnameOSArchBUILDCHECKBUILD BIN
quantsmooth 1.4.0
Jan Oosting
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK [ OK ]
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: quantsmooth
Version: 1.4.0
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check quantsmooth_1.4.0.tar.gz
RetCode: 0
Time: 34.5 seconds
Status: OK
CheckDir: quantsmooth.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/quantsmooth.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
lengthChromosome: no visible binding for global variable 'chrom.bands'
paintCytobands: no visible binding for global variable 'chrom.bands'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating quantsmooth-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating quantsmooth-manual.tex ... OK
* checking quantsmooth-manual.tex ... OK

quantsmooth.Rcheck/00install.out:

* Installing *source* package 'quantsmooth' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'quantsmooth'
     Formats: text html latex example 
  Chromosome14                      text    html    latex
  drawSimpleChrom                   text    html    latex   example
  getChangedIdx                     text    html    latex
  getChangedRegions                 text    html    latex   example
  getLambdaMin                      text    html    latex   example
  lengthChromosome                  text    html    latex   example
  numericCHR                        text    html    latex   example
  paintCytobands                    text    html    latex   example
  plotChromosome                    text    html    latex
  plotSmoothed                      text    html    latex   example
  prepareGenomePlot                 text    html    latex
  quantsmooth                       text    html    latex   example
  quantsmooth.cv                    text    html    latex   example
  quantsmooth.seg                   text    html    latex   example
  scaleto                           text    html    latex
** building package indices ...
* DONE (quantsmooth)