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| Package 77/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
| genefilter 1.16.0 Biocore Team c/o BioC user list Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
| pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
| Package: genefilter |
| Version: 1.16.0 |
| Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check genefilter_1.16.0.tar.gz |
| RetCode: 0 |
| Time: 209.4 seconds |
| Status: OK |
| CheckDir: genefilter.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/genefilter.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'genefilter/DESCRIPTION' ... OK * this is package 'genefilter' version '1.16.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'genefilter' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE eSetFilter : buildGUI: no visible binding for '<<-' assignment to 'END' eSetFilter : buildGUI : finish: no visible binding for '<<-' assignment to 'END' eSetFilter : buildGUI: no visible binding for global variable 'END' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating genefilter-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating genefilter-manual.tex ... OK * checking genefilter-manual.tex ... OK
genefilter.Rcheck/00install.out:
* Installing *source* package 'genefilter' ...
** libs
g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c half_range_mode.cpp -o half_range_mode.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c nd.c -o nd.o
nd.c: In function `gf_dist_binary':
nd.c:242: warning: unused variable `w1'
nd.c:242: warning: unused variable `w2'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c pAUC.c -o pAUC.o
pAUC.c: In function `pAUC_c':
pAUC.c:75: warning: operation on `ta' may be undefined
pAUC.c:78: warning: operation on `ta' may be undefined
pAUC.c:81: warning: operation on `ta' may be undefined
pAUC.c: In function `pAUC':
pAUC.c:141: warning: suggest parentheses around comparison in operand of |
pAUC.c:123: warning: unused variable `i'
pAUC.c: In function `pAUC_c':
pAUC.c:22: warning: `xsum' might be used uninitialized in this function
pAUC.c:22: warning: `ysum' might be used uninitialized in this function
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function `ROCpAUC_c':
rowPAUCs.c:96: warning: operation on `ta' may be undefined
rowPAUCs.c:99: warning: operation on `ta' may be undefined
rowPAUCs.c:102: warning: operation on `ta' may be undefined
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c rowttests.c -o rowttests.o
g77 -fpic -g -O2 -Wall -c ttest.f -o ttest.o
g++ -shared -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lg2c -lm -lgcc_s -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
Creating a new generic function for "plot" in "genefilter"
** help
>>> Building/Updating help pages for package 'genefilter'
Formats: text html latex example
Anova text html latex example
allNA text html latex example
coxfilter text html latex example
cv text html latex example
dist2 text html latex example
eSetFilter text html latex example
filterfun text html latex example
findLargest text html latex example
gapFilter text html latex example
genefilter text html latex example
genefinder text html latex example
genescale text html latex example
half.range.mode text html latex example
kOverA text html latex example
maxA text html latex example
nsFilter text html latex example
pOverA text html latex example
rowFtests text html latex example
rowROC-class text html latex example
rowSds text html latex example
rowpAUCs text html latex example
shorth text html latex example
tdata text html latex example
ttest text html latex example
** building package indices ...
* DONE (genefilter)