Package: genefilter

Version: 1.16.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=genefilter.buildbin-libdir genefilter_1.16.0.tar.gz

RetCode: 0

Time: 27.8 seconds

Status: OK

PackageFile: genefilter_1.16.0.zip

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/genefilter.buildbin-libdir

Using auto-selected zip options 'genefilter-ZIPDATA=zip genefilter-HELP=ziponly'

---------- Making package genefilter ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making init.d from init.c
making nd.d from nd.c
making pAUC.d from pAUC.c
making rowPAUCs.d from rowPAUCs.c
making rowttests.d from rowttests.c
making half_range_mode.d from half_range_mode.cpp
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c init.c -o init.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c nd.c -o nd.o
nd.c: In function 'gf_dist_binary':
nd.c:242: warning: unused variable 'w2'
nd.c:242: warning: unused variable 'w1'
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC_c':
pAUC.c:75: warning: operation on 'ta' may be undefined
pAUC.c:78: warning: operation on 'ta' may be undefined
pAUC.c:81: warning: operation on 'ta' may be undefined
pAUC.c: In function 'pAUC':
pAUC.c:141: warning: suggest parentheses around comparison in operand of |
pAUC.c:123: warning: unused variable 'i'
pAUC.c: In function 'pAUC_c':
pAUC.c:22: warning: 'ysum' may be used uninitialized in this function
pAUC.c:22: warning: 'xsum' may be used uninitialized in this function
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function 'ROCpAUC_c':
rowPAUCs.c:96: warning: operation on 'ta' may be undefined
rowPAUCs.c:99: warning: operation on 'ta' may be undefined
rowPAUCs.c:102: warning: operation on 'ta' may be undefined
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c rowttests.c -o rowttests.o
gfortran-sjlj  -O3 -Wall  -c ttest.f -o ttest.o
g++-sjlj   -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O2  -c half_range_mode.cpp -o half_range_mode.o
half_range_mode.cpp: In function 'double half_range_mode(double*, double*, double, int)':
half_range_mode.cpp:101: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.1-bioc/R/include  -i genefilter_res.rc -o genefilter_res.o
g++-sjlj   -shared -s  -o genefilter.dll genefilter.def init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o half_range_mode.o genefilter_res.o  -LE:/biocbld/bbs-2.1-bioc/R/bin   -lgfortran -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package genefilter for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "plot" in "genefilter"
  preparing package genefilter for lazy data loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'genefilter'
     Formats: text html latex example chm 
  Anova                             text    html    latex   example chm
  allNA                             text    html    latex   example chm
  coxfilter                         text    html    latex   example chm
  cv                                text    html    latex   example chm
  dist2                             text    html    latex   example chm
  eSetFilter                        text    html    latex   example chm
  filterfun                         text    html    latex   example chm
  findLargest                       text    html    latex   example chm
  gapFilter                         text    html    latex   example chm
  genefilter                        text    html    latex   example chm
  genefinder                        text    html    latex   example chm
  genescale                         text    html    latex   example chm
  half.range.mode                   text    html    latex   example chm
  kOverA                            text    html    latex   example chm
  maxA                              text    html    latex   example chm
  nsFilter                          text    html    latex   example chm
  pOverA                            text    html    latex   example chm
  rowFtests                         text    html    latex   example chm
  rowROC-class                      text    html    latex   example chm
  rowSds                            text    html    latex   example chm
  rowpAUCs                          text    html    latex   example chm
  shorth                            text    html    latex   example chm
  tdata                             text    html    latex   example chm
  ttest                             text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.2276\genefilter\chm\genefilter.chm





Compile time: 0 minutes, 1 second

25	Topics

124	Local links

2	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.2276\genefilter\chm\genefilter.chm, 56,143 bytes

Compression decreased file by 52,288 bytes.

  adding MD5 sums

packaged installation of package 'genefilter' as genefilter_1.16.0.zip
* DONE (genefilter)