Package: Icens

Version: 1.10.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check Icens_1.10.0.tar.gz

RetCode: 0

Time: 60.8 seconds

Status: OK

CheckDir: Icens.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Icens' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.icsurv':
  plot.icsurv

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating Icens-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck/tests'
  Running 'testbv.R'
  Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
<  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -7.663560e-17
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
OK
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck/tests'
 OK
* creating Icens-manual.tex ... OK
* checking Icens-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck


---------- Making package Icens ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Icens'
     Formats: text html latex example chm 
  BVcliques                         text    html    latex   example chm
  BVclmat                           text    html    latex   example chm
  BVsupport                         text    html    latex   example chm
  Bisect                            text    html    latex           chm
  EM                                text    html    latex   example chm
  EMICM                             text    html    latex   example chm
  ISDM                              text    html    latex   example chm
  Icens-internal                    text    html    latex           chm
  MLEintvl                          text    html    latex   example chm
  Maclist                           text    html    latex   example chm
  Macmat                            text    html    latex   example chm
  PGM                               text    html    latex   example chm
  PMGA                              text    html    latex           chm
  Plotboxes                         text    html    latex   example chm
  VEM                               text    html    latex   example chm
  cmv                               text    html    latex   example chm
  cosmesis                          text    html    latex   example chm
  hiv                               text    html    latex   example chm
  icsurv                            text    html    latex           chm
  plot.icsurv                       text    html    latex   example chm
  pruitt                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\Icens.Rcheck\00_pkg_src\Icens\chm\Icens.chm


Compile time: 0 minutes, 1 second
22	Topics
94	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\Icens.Rcheck\00_pkg_src\Icens\chm\Icens.chm, 39,592 bytes
Compression decreased file by 28,611 bytes.
  preparing package Icens for lazy loading
Loading required package: survival
Loading required package: splines
  adding MD5 sums

* DONE (Icens)