Package: Icens

Version: 1.10.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check Icens_1.10.0.tar.gz

RetCode: 0

Time: 36.5 seconds

Status: OK

CheckDir: Icens.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/Icens.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Icens' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.icsurv':
  plot.icsurv

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating Icens-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/home/biocbuild/bbs-2.1-bioc/meat/Icens.Rcheck/tests'
  Running 'testbv.R'
  Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
<  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.640501e-16
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
 OK
make[1]: Leaving directory `/home/biocbuild/bbs-2.1-bioc/meat/Icens.Rcheck/tests'
 OK
* creating Icens-manual.tex ... OK
* checking Icens-manual.tex ... OK

* Installing *source* package 'Icens' ...
** R
** data
** preparing package for lazy loading
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'Icens'
     Formats: text html latex example 
  BVcliques                         text    html    latex   example
  BVclmat                           text    html    latex   example
  BVsupport                         text    html    latex   example
  Bisect                            text    html    latex
  EM                                text    html    latex   example
  EMICM                             text    html    latex   example
  ISDM                              text    html    latex   example
  Icens-internal                    text    html    latex
  MLEintvl                          text    html    latex   example
  Maclist                           text    html    latex   example
  Macmat                            text    html    latex   example
  PGM                               text    html    latex   example
  PMGA                              text    html    latex
  Plotboxes                         text    html    latex   example
  VEM                               text    html    latex   example
  cmv                               text    html    latex   example
  cosmesis                          text    html    latex   example
  hiv                               text    html    latex   example
  icsurv                            text    html    latex
  plot.icsurv                       text    html    latex   example
  pruitt                            text    html    latex   example
** building package indices ...
* DONE (Icens)