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| Package 41/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
| BufferedMatrixMethods 1.2.0 B. M. Bolstad Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
| pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
| Package: BufferedMatrixMethods |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check BufferedMatrixMethods_1.2.0.tar.gz |
| RetCode: 0 |
| Time: 17.5 seconds |
| Status: OK |
| CheckDir: BufferedMatrixMethods.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/BufferedMatrixMethods.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BufferedMatrixMethods' version '1.2.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'BufferedMatrixMethods' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating BufferedMatrixMethods-Ex.R ... OK * checking examples ... OK * creating BufferedMatrixMethods-manual.tex ... OK * checking BufferedMatrixMethods-manual.tex ... OK
BufferedMatrixMethods.Rcheck/00install.out:
* Installing *source* package 'BufferedMatrixMethods' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -I"/home/biocbuild/bbs-2.1-bioc/R/library/BufferedMatrix/include" -fpic -g -O2 -Wall -c init_package.c -o init_package.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -I"/home/biocbuild/bbs-2.1-bioc/R/library/BufferedMatrix/include" -fpic -g -O2 -Wall -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:342: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:376: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:591: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:451: warning: 'min' defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib64 -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** help
>>> Building/Updating help pages for package 'BufferedMatrixMethods'
Formats: text html latex example
rmapreprocess.bufferedmatrix text html latex
** building package indices ...
* DONE (BufferedMatrixMethods)