BioC 2.1: CHECK report for idiogram on liverpool

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/idiogram.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'idiogram/DESCRIPTION' ... OK
* this is package 'idiogram' version '1.11.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'idiogram' can be installed ... WARNING
Found the following significant warnings:
  Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
See 'E:/biocbld/bbs-2.1-bioc/meat/idiogram.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating idiogram-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating idiogram-manual.tex ... OK
* checking idiogram-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/idiogram.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/idiogram.Rcheck


---------- Making package idiogram ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package idiogram for lazy data loading
Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'idiogram'
     Formats: text html latex example chm 
  Hs.cytoband                       text    html    latex   example chm
  buildChromLocation.2              text    html    latex   example chm
  cytoband                          text    html    latex   example chm
  idiograb                          text    html    latex   example chm
  idiogram                          text    html    latex   example chm
  idiogramExample                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\idiogram.Rcheck\00_pkg_src\idiogram\chm\idiogram.chm


Compile time: 0 minutes, 0 seconds
7	Topics
22	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\idiogram.Rcheck\00_pkg_src\idiogram\chm\idiogram.chm, 27,409 bytes
Compression decreased file by 1,282 bytes.
  adding MD5 sums

* DONE (idiogram)

Package 114/247	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
idiogram 1.11.3 Karl J. Dykema Last Changed Date: 2007-08-16 12:39:48 -0700 Last Changed Rev: 26458	lamb1	Linux (SUSE 10.1)	x86_64	OK	WARNINGS
	wellington	Linux (SUSE 9.2)	i686	OK	WARNINGS
	liverpool	Windows Server 2003 R2 (32-bit)	x64	OK	[ WARNINGS ]	OK
	pitt	Mac OS X (10.4.10)	i386	OK	WARNINGS	OK

idiogram

1.11.3

Command output