Package: idiogram

Version: 1.11.3

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check idiogram_1.11.3.tar.gz

RetCode: 0

Time: 57.8 seconds

Status: WARNINGS

CheckDir: idiogram.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/idiogram.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'idiogram/DESCRIPTION' ... OK
* this is package 'idiogram' version '1.11.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'idiogram' can be installed ... WARNING
Found the following significant warnings:
  Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
  Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
See '/home/biocbuild/bbs-2.1-bioc/meat/idiogram.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating idiogram-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating idiogram-manual.tex ... OK
* checking idiogram-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/bbs-2.1-bioc/meat/idiogram.Rcheck/00check.log
for details

* Installing *source* package 'idiogram' ...
** R
** data
**  moving datasets to lazyload DB
Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it
Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it
** inst
** help
 >>> Building/Updating help pages for package 'idiogram'
     Formats: text html latex example 
  Hs.cytoband                       text    html    latex   example
  buildChromLocation.2              text    html    latex   example
  cytoband                          text    html    latex   example
  idiograb                          text    html    latex   example
  idiogram                          text    html    latex   example
  idiogramExample                   text    html    latex   example
** building package indices ...
* DONE (idiogram)