Package: flowViz

Version: 1.1.4

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check flowViz_1.1.4.tar.gz

RetCode: 0

Time: 475.3 seconds

Status: WARNINGS

CheckDir: flowViz.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/flowViz.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-10 r42465)
* checking for file 'flowViz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowViz' version '1.1.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowViz' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  panel.densityplot.flowset panel.ecdfplot.flowset
  prepanel.densityplot.flowset prepanel.ecdfplot.flowset
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowViz-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating flowViz-manual.tex ... OK
* checking flowViz-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.1-bioc/meat/flowViz.Rcheck/00check.log
for details

* Installing *source* package 'flowViz' ...
** R
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Scalable Robust Estimators with High Breakdown Point (version 0.3-06)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: rgl
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: lattice
Loading required package: MASS
Creating a new generic function for "ecdfplot" in "flowViz"
Creating a new generic function for "densityplot" in "flowViz"
Creating a new generic function for "levelplot" in "flowViz"
Creating a new generic function for "qqmath" in "flowViz"
Creating a new generic function for "splom" in "flowViz"
Creating a new generic function for "parallel" in "flowViz"
Creating a new generic function for "xyplot" in "flowViz"
** help
Note: unmatched right brace in 'flowPlot' on or after line 57
 >>> Building/Updating help pages for package 'flowViz'
     Formats: text html latex example 
  ecdfplot                          text    html    latex   example
  flowPlot                          text    html    latex   example
  flowViz-package                   text    html    latex   example
  latticeMethods-flowSet            text    html    latex   example
  xyplot                            text    html    latex   example
** building package indices ...
* DONE (flowViz)