Package: explorase

Version: 1.1.3

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check explorase_1.1.3.tar.gz

RetCode: 0

Time: 42.5 seconds

Status: OK

CheckDir: explorase.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/explorase.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'explorase/DESCRIPTION' ... OK
* this is package 'explorase' version '1.1.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'explorase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
color.click.dn: no visible global function definition for
  'getDefaultGGobi'
color.click.tr: no visible global function definition for
  'getDefaultGGobi'
color.click.tr: no visible global function definition for 'snip.tree'
color.click.tr: no visible global function definition for
  'setColors.ggobi'
color.node.tr: no visible global function definition for
  'getDefaultGGobi'
designViewWindow: no visible binding for global variable 'mainWindow'
fileOpenDialog: no visible binding for global variable 'mainWindow'
fileSaveDialog: no visible binding for global variable 'mainWindow'
findPatternWindow: no visible binding for global variable 'mainWindow'
folderSelectDialog: no visible binding for global variable 'mainWindow'
ggobiTreeWindow: no visible binding for global variable 'mainWindow'
limmaWindow: no visible binding for global variable 'mainWindow'
setup.gobitree: no visible global function definition for
  'scatterplot.ggobi'
startTask: no visible global function definition for 'getStatusBar'
stopTask: no visible binding for global variable 'taskBar'
temporalWindow: no visible binding for global variable 'mainWindow'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating explorase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating explorase-manual.tex ... OK
* checking explorase-manual.tex ... OK

* Installing *source* package 'explorase' ...
** R
** inst
** preparing package for lazy loading
Loading required package: rggobi
Loading required package: RGtk2
Loading required package: limma
** help
 >>> Building/Updating help pages for package 'explorase'
     Formats: text html latex example 
  exp-addEntityType-vx              text    html    latex   example
  exp-addFilterRule-rn              text    html    latex   example
  exp-calcAngleDist-31              text    html    latex   example
  exp-calcCorrelationDist-45        text    html    latex   example
  exp-calcDiff-y4                   text    html    latex   example
  exp-calcEuclideanDist-dn          text    html    latex   example
  exp-calcMahalanobisDist-r1        text    html    latex   example
  exp-calcResiduals-ps              text    html    latex   example
  exp-calcZeroCorDist-by            text    html    latex   example
  exp-close                         text    html    latex
  exp-colorEntities-1h              text    html    latex   example
  exp-dataset-6l                    text    html    latex   example
  exp-designFactors-72              text    html    latex   example
  exp-designFrame-d0                text    html    latex   example
  exp-designSelection-5s            text    html    latex   example
  exp-entitiesInList-df             text    html    latex   example
  exp-entityFrame-4j                text    html    latex   example
  exp-entitySelection-11            text    html    latex   example
  exp-entityType-69                 text    html    latex   example
  exp-entityTypes-9e                text    html    latex   example
  exp-filterRules-vt                text    html    latex   example
  exp-findPatterns-yw               text    html    latex   example
  exp-ggobi-69                      text    html    latex   example
  exp-isRunning-fo                  text    html    latex   example
  exp-listFrame-gp                  text    html    latex   example
  exp-listSelection                 text    html    latex   example
  exp-loadData-bo                   text    html    latex   example
  exp-loadDesign-35                 text    html    latex   example
  exp-loadFiles-1w                  text    html    latex   example
  exp-loadInfo-gk                   text    html    latex   example
  exp-loadLists-pr                  text    html    latex   example
  exp-loadProject-1g                text    html    latex   example
  exp-newList-bs                    text    html    latex   example
  exp-removeFilterRules-1i          text    html    latex   example
  exp-showClustering-b7             text    html    latex   example
  exp-showPatterns-bh               text    html    latex   example
  exp-showResults-sk                text    html    latex   example
  exp-toggleFilterRules-ts          text    html    latex   example
  explorase                         text    html    latex
** building package indices ...
* DONE (explorase)