Package: AnnotationDbi

Version: 0.1.3

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build AnnotationDbi

RetCode: 1

Time: 44.8 seconds

Status: ERROR

PackageFile: None

* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* preparing 'AnnotationDbi':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'AnnotationDbi' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
 >>> Building/Updating help pages for package 'AnnotationDbi'
     Formats: text html latex example 
  AnnDbPkgSeed-class                text    html    latex   example
  Bimap-direction                   text    html    latex   example
     missing link(s):  Bimap
  Bimap-keys                        text    html    latex   example
     missing link(s):  Bimap
  GONode-class                      text    html    latex   example
  makeAnnDbPkg                      text    html    latex   example
  make_eg_to_go_map                 text    html    latex   example
** building package indices ...
* DONE (AnnotationDbi)
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite

Error: processing vignette 'AnnDbMapDemo.Rnw' failed with diagnostics:
 chunk 11 (label=toTable) 
Error in sqliteExecStatement(con, statement, bind.data) : 
  RS-DBI driver: (error in statement: near ",": syntax error)
In addition: Warning message:
In if (!is.na(L2Rlink@tagname)) L2Rlink@tagname :
  the condition has length > 1 and only the first element will be used
Execution halted