Package: ABarray

Version: 1.5.1

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check ABarray_1.5.1.tar.gz

RetCode: 0

Time: 55.7 seconds

Status: WARNINGS

CheckDir: ABarray.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/ABarray.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'ABarray/DESCRIPTION' ... OK
* this is package 'ABarray' version '1.5.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ABarray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  tcltk
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ABarray: no visible binding for global variable 'colSn'
ABarrayGUI : getImputeFunc: no visible binding for global variable
  'knnRbtn'
getPantherMap: no visible binding for global variable 'panther'
Found possibly global 'T' or 'F' in the following functions:
  ABarray ABarrayGUI calcsn concord cvv cvvPlot doANOVA doLPE
  doPlotEset doPlotFCT hclusterPlot icpPlot imputeFlag mamaplot
  mvaPair2 qnNormalize snSummary
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ABarray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ABarray-manual.tex ... OK
* checking ABarray-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/ABarray.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/ABarray.Rcheck


---------- Making package ABarray ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ABarray'
     Formats: text html latex example chm 
  ABarray                           text    html    latex   example chm
  ABarrayGUI                        text    html    latex   example chm
  calcsn                            text    html    latex   example chm
  concord                           text    html    latex   example chm
  cvv                               text    html    latex   example chm
  cvvPlot                           text    html    latex   example chm
  doANOVA                           text    html    latex   example chm
  doLPE                             text    html    latex   example chm
  doPlotEset                        text    html    latex   example chm
  doPlotFCT                         text    html    latex   example chm
  doVennDiagram                     text    html    latex   example chm
  drawVennDiagram                   text    html    latex   example chm
  getMemberEset                     text    html    latex   example chm
  getPantherMap                     text    html    latex   example chm
  hclusterPlot                      text    html    latex   example chm
  icpPlot                           text    html    latex   example chm
  imputeFlag                        text    html    latex   example chm
  lpe.fdr.BH                        text    html    latex   example chm
  mamaplot                          text    html    latex   example chm
  matrixPlot                        text    html    latex   example chm
  mvaPair2                          text    html    latex   example chm
  panel.cor                         text    html    latex   example chm
  panel.scatter                     text    html    latex   example chm
  qnNormalize                       text    html    latex   example chm
  rgcolorsfunc                      text    html    latex   example chm
  savejpg                           text    html    latex   example chm
  scaleColorBar                     text    html    latex   example chm
  snSummary                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\ABarray.Rcheck\00_pkg_src\ABarray\chm\ABarray.chm


Compile time: 0 minutes, 0 seconds
29	Topics
58	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\ABarray.Rcheck\00_pkg_src\ABarray\chm\ABarray.chm, 40,224 bytes
Compression decreased file by 33,448 bytes.
  preparing package ABarray for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: multtest
Loading required package: survival
Loading required package: splines
  adding MD5 sums

* DONE (ABarray)