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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
Package 214/238HostnameOSArchBUILDCHECKBUILD BIN

simulatorAPMS

1.9.0

Tony Chiang
Last Changed Date: 2007-04-24 11:31:42 -0700
Last Changed Rev: 24217
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686  ERROR skipped
churchill Solaris 2.9 sparc [ ERROR ]skipped
lemming Windows Server 2003 (32-bit) x64  ERROR skippedskipped
Package: simulatorAPMS
Version: 1.9.0
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build simulatorAPMS
RetCode: 1
Time: 13.2 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* preparing 'simulatorAPMS':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'simulatorAPMS' ...
** R
** data
** inst
** help
Note: unmatched right brace in 'filteredProt' on or after line 14
 >>> Building/Updating help pages for package 'simulatorAPMS'
     Formats: text html latex example 
  APComEX                           text    html    latex   example
  PPIEX                             text    html    latex   example
  TSNMatrix                         text    html    latex   example
  applyDeformationError             text    html    latex   example
  applyFNErrors                     text    html    latex   example
  applyFPErrors                     text    html    latex   example
  applyStickyError                  text    html    latex   example
  compIndep                         text    html    latex   example
  filteredProt                      text    html    latex   example
  fullSimEX                         text    html    latex   example
  missedProtEX                      text    html    latex   example
  missedProtHMSPCI                  text    html    latex   example
  recordSticky                      text    html    latex   example
  runAPComplex                      text    html    latex   example
  runCompIndep                      text    html    latex   example
  runSimEX                          text    html    latex   example
  runSimulators                     text    html    latex   example
  simEX                             text    html    latex   example
  simulator                         text    html    latex   example
  simulatorD                        text    html    latex   example
  simulatorS                        text    html    latex   example
  vBaits                            text    html    latex   example
  vBaitsEX                          text    html    latex   example
  vDeformEX                         text    html    latex   example
  vDeformed                         text    html    latex   example
  vDeformedEX                       text    html    latex   example
  vStickyEX                         text    html    latex   example
** building package indices ...
* DONE (simulatorAPMS)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: apComplex
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: ScISI

Error: processing vignette 'simulatorAPMS.Rnw' failed with diagnostics:
 chunk 1 (label=loadlibs) 
Error : package 'ScISI' could not be loaded
In addition: Warning message:
In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  there is no package called 'ScISI'
Execution halted