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| NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier |
| Package 212/238 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
sigPathway1.5.0Weil LaiLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | [ OK ] | OK | ||
| churchill | Solaris 2.9 | sparc | OK | OK | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | skipped | skipped |
| Package: sigPathway |
| Version: 1.5.0 |
| Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build sigPathway |
| RetCode: 0 |
| Time: 44.1 seconds |
| Status: OK |
| PackageFile: sigPathway_1.5.0.tar.gz |
* checking for file 'sigPathway/DESCRIPTION' ... OK
* preparing 'sigPathway':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'sigPathway' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c calc_probe_stat.c -o calc_probe_stat.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c calc_weights.c -o calc_weights.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c matrix_fn.c -o matrix_fn.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c permute.c -o permute.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c shuffle.c -o shuffle.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c sigPathway.c -o sigPathway.o
gcc -std=gnu99 -shared -L/usr/local/lib -o sigPathway.so calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lRlapack -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lRblas -lg2c -lm -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'sigPathway'
Formats: text html latex example
MuscleExample text html latex
calcTNullFast text html latex
calcTStatFast text html latex example
calculate.GSEA text html latex
calculate.NGSk text html latex example
calculatePathwayStatistics text html latex example
estimateNumPerm text html latex example
getPathwayStatistics.NGSk text html latex
getPathwayStatistics text html latex
rankPathways.NGSk text html latex
rankPathways text html latex
runSigPathway text html latex example
selectGeneSets text html latex
writeSigPathway text html latex
** building package indices ...
* DONE (sigPathway)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'sigPathway_1.5.0.tar.gz'