Package: plier

Version: 1.7.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check plier_1.7.0.tar.gz

RetCode: 0

Time: 50.5 seconds

Status: OK

CheckDir: plier.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/plier.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'plier/DESCRIPTION' ... OK
* this is package 'plier' version '1.7.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plier' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found possibly global 'T' or 'F' in the following functions:
  .testoneprobeset justPlier
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating plier-Ex.R ... OK
* checking examples ... OK
* creating plier-manual.tex ... OK
* checking plier-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/plier.Rcheck


---------- Making package plier ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making affyplier.d from affyplier.cpp
making plier_impl.d from plier_impl.cpp
making plieralg.d from plieralg.cpp
making rwrapper.d from rwrapper.cpp
g++   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2   -c affyplier.cpp -o affyplier.o
g++   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2   -c plier_impl.cpp -o plier_impl.o
g++   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2   -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function `long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:909: warning: 'LogLikelihood' might be used uninitialized in this function
plieralg.cpp: At global scope:
plieralg.cpp:48: warning: 'g_ErrorCode' defined but not used
g++   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2   -c rwrapper.cpp -o rwrapper.o
rwrapper.cpp: In function `void one_probeset(bool*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, bool*, bool*, bool*, double*, double*, int*, int*, int*, long int*, double*, double*, double*, double*, int*)':
rwrapper.cpp:159: warning: 'rpct' might be used uninitialized in this function
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i plier_res.rc -o plier_res.o
g++  -shared -s  -o plier.dll plier.def affyplier.o plier_impl.o plieralg.o rwrapper.o plier_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'plier'
     Formats: text html latex example chm 
  justPlier                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\plier.Rcheck\00_pkg_src\plier\chm\plier.chm


Compile time: 0 minutes, 0 seconds
2	Topics
2	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\plier.Rcheck\00_pkg_src\plier\chm\plier.chm, 16,998 bytes
Compression increased file by 7,778 bytes.
  adding MD5 sums

* DONE (plier)