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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
Package 157/238HostnameOSArchBUILDCHECKBUILD BIN

pairseqsim

1.9.3

Witold Wolski
Last Changed Date: 2007-06-10 10:22:32 -0700
Last Changed Rev: 25301
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686 [ ERROR ]skipped
churchill Solaris 2.9 sparc  ERROR skipped
lemming Windows Server 2003 (32-bit) x64  ERROR skippedskipped
Package: pairseqsim
Version: 1.9.3
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build pairseqsim
RetCode: 1
Time: 16.8 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'pairseqsim' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c align.c -o align.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c basic.c -o basic.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c callalign.c -o callalign.o
gcc -std=gnu99 -shared -L/usr/local/lib -o pairseqsim.so align.o basic.o callalign.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** help
Note: unmatched right brace in 'EPAM110' on or after line 80
Note: unmatched right brace in 'Submatrix-class' on or after line 14
 >>> Building/Updating help pages for package 'pairseqsim'
     Formats: text html latex example 
  AAAlignment-class                 text    html    latex   example
  AAAlphabet-class                  text    html    latex   example
  AASequence-class                  text    html    latex   example
  AASequence                        text    html    latex   example
  AASequenceList-class              text    html    latex   example
  EPAM110                           text    html    latex   example
  Submatrix-class                   text    html    latex
  listdist-methods                  text    html    latex
  readFasta-methods                 text    html    latex   example
  salign-methods                    text    html    latex   example
  sequlist                          text    html    latex   example
  testalign-methods                 text    html    latex
** building package indices ...
* DONE (pairseqsim)
* creating vignettes ... ERROR
Creating a new generic function for "levels" in "pairseqsim"
Creating a new generic function for "frequency" in "pairseqsim"
Creating a new generic function for "summary" in "pairseqsim"
 Refusing to claim no (or even less memmory ... !