Package: makePlatformDesign

Version: 1.1.1

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check makePlatformDesign_1.1.1.tar.gz

RetCode: 0

Time: 81.5 seconds

Status: OK

CheckDir: makePlatformDesign.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/makePlatformDesign.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'makePlatformDesign/DESCRIPTION' ... OK
* this is package 'makePlatformDesign' version '1.1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'makePlatformDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
makePDpackage.old: possible error in makeSNPenv(filename, seqfile,
  annotfile, textCDF): unused argument(s) (textCDF)
readndfplex: no visible binding for global variable 'PROBE_CLASS'
readndfplex: no visible binding for global variable 'PROBE_CLASS'
writePackage: no visible binding for global variable 'verbose'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makePlatformDesign-Ex.R ... OK
* checking examples ... OK
* creating makePlatformDesign-manual.tex ... OK
* checking makePlatformDesign-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/makePlatformDesign.Rcheck


---------- Making package makePlatformDesign ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making main.d from main.c
making strutils.d from strutils.c
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c main.c -o main.o
main.c: In function `strstr_with_pmormm':
main.c:70: warning: suggest parentheses around assignment used as truth value
main.c:89: warning: suggest parentheses around assignment used as truth value
main.c: In function `MP_matchprobes':
main.c:113: warning: 'rvpos' might be used uninitialized in this function
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c strutils.c -o strutils.o
strutils.c: In function `MP_longestConsecutive':
strutils.c:263: warning: long int format, size_t arg (arg 3)
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i makePlatformDesign_res.rc -o makePlatformDesign_res.o
gcc  -shared -s  -o makePlatformDesign.dll makePlatformDesign.def main.o strutils.o makePlatformDesign_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'makePlatformDesign'
     Formats: text html latex example chm 
  makePDpackage                     text    html    latex   example chm
  makePlatformDesign-internal       text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\makePlatformDesign.Rcheck\00_pkg_src\makePlatformDesign\chm\makePlatformDesign.chm


Compile time: 0 minutes, 0 seconds
3	Topics
36	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\makePlatformDesign.Rcheck\00_pkg_src\makePlatformDesign\chm\makePlatformDesign.chm, 18,929 bytes
Compression decreased file by 2,074 bytes.
  preparing package makePlatformDesign for lazy loading
Loading required package: affyio
Loading required package: oligo
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: BufferedMatrix
Loading required package: BufferedMatrixMethods
Loading required package: preprocessCore
This is the oligo package
  adding MD5 sums

* DONE (makePlatformDesign)