BioC 2.1: CHECK report for maSigPro on lemming

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/maSigPro.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
see.genes: no visible global function definition for 'maPalette'
see.genes: no visible global function definition for 'knn'
stepback: no visible binding for global variable 'dis'
stepfor: no visible binding for global variable 'dis'
suma2Venn: no visible global function definition for 'vennDiagram'
T.fit: no visible binding for '<<-' assignment to 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
T.fit: no visible binding for global variable 'dis'
two.ways.stepback: no visible binding for global variable 'dis'
two.ways.stepfor: no visible binding for global variable 'dis'
Found possibly global 'T' or 'F' in the following functions:
  PlotGroups see.genes
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating maSigPro-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maSigPro-manual.tex ... OK
* checking maSigPro-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/maSigPro.Rcheck


---------- Making package maSigPro ------------
  adding build stamp to DESCRIPTION
  installing R files
  preparing package maSigPro for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'maSigPro'
     Formats: text html latex example chm 
  PlotGroups                        text    html    latex   example chm
  PlotProfiles                      text    html    latex   example chm
  T.fit                             text    html    latex   example chm
  average.rows                      text    html    latex   example chm
  data.abiotic                      text    html    latex   example chm
  edesign.OD                        text    html    latex   example chm
  edesign.abiotic                   text    html    latex   example chm
  edesignCT                         text    html    latex   example chm
  edesignDR                         text    html    latex   example chm
  get.siggenes                      text    html    latex   example chm
  i.rank                            text    html    latex   example chm
  maSigPro                          text    html    latex   example chm
  make.design.matrix                text    html    latex   example chm
  p.vector                          text    html    latex   example chm
  position                          text    html    latex   example chm
  reg.coeffs                        text    html    latex   example chm
  see.genes                         text    html    latex   example chm
  stepback                          text    html    latex   example chm
  stepfor                           text    html    latex   example chm
  suma2Venn                         text    html    latex   example chm
  two.ways.stepback                 text    html    latex   example chm
  two.ways.stepfor                  text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\maSigPro.Rcheck\00_pkg_src\maSigPro\chm\maSigPro.chm


Compile time: 0 minutes, 0 seconds
23	Topics
137	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\maSigPro.Rcheck\00_pkg_src\maSigPro\chm\maSigPro.chm, 58,751 bytes
Compression decreased file by 72,326 bytes.
  adding MD5 sums

* DONE (maSigPro)

Package 133/238	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
maSigPro 1.9.0 Ana Conesa Last Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616	lamb1	Linux (SUSE 10.1)	x86_64	OK	OK
	wellington	Linux (SUSE 9.2)	i686	OK	OK
	churchill	Solaris 2.9	sparc	OK	OK
	lemming	Windows Server 2003 (32-bit)	x64	OK	[ OK ]	skipped

maSigPro

1.9.0

Command output